rCharts with slidy

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My last post I talked about using rCharts to create interactive graphics for my interview presentations. They seemed to go over pretty well in my interviews and helped me greatly as I did not need to remember or write down specific numbers to talk about. I use slidy to create my HTML slideshows and there was some interest from my last post to see exactly how I had these charts into a slidy html presentation.

First off, I did not use rCharts and knitr in tandem, but that would make the workflow a bit easier. The major thing you’d want to remember is to make sure to add the following chunk option: results = ‘asis’. This will ensure that the raw html printed from rCharts will be included in the markdown file as is.

I personally just copy and pasted the javascript into my markdown presentation (instead of using knitr as talked about above). This was easier for me as I edited many specific options in the raw Javascript to come to my final version (and created a boxplot from scratch). It would be possible to make all the edits directly through the rCharts framework, but I found it easier to edit the raw Javascript by looking at the highcharts.js documentation to get the figure I was looking for.

For those who did not see my last post, here is the R code I used to create my graphic:

library(rCharts)

h1 <- hPlot(x = "GenSerCor", y = "percent", group = "FitSerCor", data = converge)
h1$yAxis(title = list(text = "Convergence Rate"), min = 0, max = 100, tickInterval = 10)
h1$xAxis(title = list(text = "Generated Serial Correlation Structure"),
         categories = c("Ind", "AR1", "MA1", "MA2", "ARMA"))
h1$legend(verticalAlign = "top", align = "right", layout = "vertical", title = list(text = "Fitted SC"))
h1$plotOptions(series = list(lineWidth = 4))
h1$print('chart1', include_assets = TRUE, cdn = TRUE)

After I ran this command in R, I edited the resulting Javascript code that was printed from the last line of the R code above. My final Javascript code can be seen below.

<span class="o"><</span><span class="nx">script</span> <span class="nx">type</span><span class="o">=</span><span class="s1">'text/javascript'</span> <span class="nx">src</span><span class="o">=</span><span class="nx">http</span><span class="o">:</span><span class="c1">//code.jquery.com/jquery-1.9.1.min.js></script></span>
<span class="o"><</span><span class="nx">script</span> <span class="nx">type</span><span class="o">=</span><span class="s1">'text/javascript'</span> <span class="nx">src</span><span class="o">=</span><span class="nx">http</span><span class="o">:</span><span class="c1">//code.highcharts.com/highcharts.js></script></span>
<span class="o"><</span><span class="nx">script</span> <span class="nx">type</span><span class="o">=</span><span class="s1">'text/javascript'</span> <span class="nx">src</span><span class="o">=</span><span class="nx">http</span><span class="o">:</span><span class="c1">//code.highcharts.com/highcharts-more.js></script></span>
<span class="o"><</span><span class="nx">script</span> <span class="nx">type</span><span class="o">=</span><span class="s1">'text/javascript'</span> <span class="nx">src</span><span class="o">=</span><span class="nx">http</span><span class="o">:</span><span class="c1">//code.highcharts.com/modules/exporting.js></script> </span>
 <span class="o"><</span><span class="nx">style</span><span class="o">></span>
  <span class="p">.</span><span class="nx">rChart</span> <span class="p">{</span>
    <span class="nx">display</span><span class="o">:</span> <span class="nx">block</span><span class="p">;</span>
    <span class="nx">margin</span><span class="o">-</span><span class="nx">left</span><span class="o">:</span> <span class="nx">auto</span><span class="p">;</span> 
    <span class="nx">margin</span><span class="o">-</span><span class="nx">right</span><span class="o">:</span> <span class="nx">auto</span><span class="p">;</span>
    <span class="nx">width</span><span class="o">:</span> <span class="mi">800</span><span class="nx">px</span><span class="p">;</span>
    <span class="nx">height</span><span class="o">:</span> <span class="mi">400</span><span class="nx">px</span><span class="p">;</span>
    <span class="nx">font</span><span class="o">-</span><span class="nx">size</span><span class="o">:</span> <span class="mi">200</span><span class="o">%</span><span class="p">;</span>
  <span class="p">}</span>  
  <span class="o"><</span><span class="err">/style></span>
<span class="o"><</span><span class="nx">div</span> <span class="nx">id</span> <span class="o">=</span> <span class="s1">'chart1'</span> <span class="kr">class</span> <span class="o">=</span> <span class="s1">'rChart highcharts'</span><span class="o">><</span><span class="err">/div></span>
<span class="o"><</span><span class="nx">script</span> <span class="nx">type</span><span class="o">=</span><span class="s1">'text/javascript'</span><span class="o">></span>
    <span class="p">(</span><span class="kd">function</span><span class="p">(</span><span class="nx">$</span><span class="p">){</span>
        <span class="nx">$</span><span class="p">(</span><span class="kd">function</span> <span class="p">()</span> <span class="p">{</span>
            <span class="kd">var</span> <span class="nx">chart</span> <span class="o">=</span> <span class="k">new</span> <span class="nx">Highcharts</span><span class="p">.</span><span class="nx">Chart</span><span class="p">({</span>
 <span class="s2">"dom"</span><span class="o">:</span> <span class="s2">"chart1"</span><span class="p">,</span>
<span class="s2">"width"</span><span class="o">:</span>            <span class="mi">800</span><span class="p">,</span>
<span class="s2">"height"</span><span class="o">:</span>            <span class="mi">400</span><span class="p">,</span>
<span class="s2">"credits"</span><span class="o">:</span> <span class="p">{</span>
 <span class="s2">"href"</span><span class="o">:</span> <span class="kc">null</span><span class="p">,</span>
<span class="s2">"text"</span><span class="o">:</span> <span class="kc">null</span> 
<span class="p">},</span>
<span class="s2">"exporting"</span><span class="o">:</span> <span class="p">{</span>
 <span class="s2">"enabled"</span><span class="o">:</span> <span class="kc">false</span> 
<span class="p">},</span>
<span class="s2">"title"</span><span class="o">:</span> <span class="p">{</span>
 <span class="s2">"text"</span><span class="o">:</span> <span class="kc">null</span> 
<span class="p">},</span>
<span class="s2">"yAxis"</span><span class="o">:</span> <span class="p">[</span>
 <span class="p">{</span>
 <span class="nx">title</span><span class="o">:</span> <span class="p">{</span>
 <span class="nx">text</span><span class="o">:</span> <span class="s2">"Convergence Rate"</span><span class="p">,</span>
  <span class="nx">style</span><span class="o">:</span> <span class="p">{</span>
   <span class="nx">fontWeight</span><span class="o">:</span> <span class="s1">'bold'</span><span class="p">,</span>
   <span class="nx">fontSize</span><span class="o">:</span> <span class="s1">'20px'</span>
   <span class="p">}</span>
 <span class="p">},</span>
 <span class="nx">labels</span><span class="o">:</span> <span class="p">{</span>
  <span class="nx">formatter</span><span class="o">:</span> <span class="kd">function</span><span class="p">()</span> <span class="p">{</span>
   <span class="k">return</span> <span class="k">this</span><span class="p">.</span><span class="nx">value</span> <span class="o">+</span> <span class="s1">'%'</span><span class="p">;</span>
  <span class="p">},</span>
  <span class="nx">style</span><span class="o">:</span> <span class="p">{</span>
   <span class="nx">fontSize</span><span class="o">:</span> <span class="s1">'18px'</span>
  <span class="p">}</span>
 <span class="p">},</span>
<span class="s2">"min"</span><span class="o">:</span>              <span class="mi">0</span><span class="p">,</span>
<span class="s2">"max"</span><span class="o">:</span>            <span class="mi">100</span><span class="p">,</span>
<span class="s2">"tickInterval"</span><span class="o">:</span>             <span class="mi">10</span> <span class="p">,</span>
<span class="nx">minRange</span><span class="o">:</span> <span class="mi">10</span>
<span class="p">}</span> 
<span class="p">],</span>
<span class="s2">"series"</span><span class="o">:</span> <span class="p">[</span>
 <span class="p">{</span>
 <span class="s2">"data"</span><span class="o">:</span> <span class="p">[</span>
 <span class="p">[</span> <span class="s2">"Ind"</span><span class="p">,</span>
   <span class="mf">68.38</span> 
<span class="p">],</span>
<span class="p">[</span> <span class="s2">"AR1"</span><span class="p">,</span>
   <span class="mf">64.88</span> 
<span class="p">],</span>
<span class="p">[</span> <span class="s2">"MA1"</span><span class="p">,</span>
   <span class="mf">55.12</span> 
<span class="p">],</span>
<span class="p">[</span> <span class="s2">"MA2"</span><span class="p">,</span>
   <span class="mf">61.98</span> 
<span class="p">],</span>
<span class="p">[</span> <span class="s2">"ARMA"</span><span class="p">,</span>
   <span class="mf">42.17</span> 
<span class="p">]</span> 
<span class="p">],</span>
<span class="nx">events</span><span class="o">:</span> <span class="p">{</span>
            <span class="nx">mouseOver</span><span class="o">:</span> <span class="kd">function</span> <span class="p">()</span> <span class="p">{</span>
                <span class="k">this</span><span class="p">.</span><span class="nx">update</span><span class="p">({</span>
                    <span class="nx">color</span><span class="o">:</span> <span class="s1">'black'</span>
                <span class="p">});</span>                
            <span class="p">},</span>
            <span class="nx">mouseOut</span><span class="o">:</span> <span class="kd">function</span> <span class="p">()</span> <span class="p">{</span>
                <span class="k">this</span><span class="p">.</span><span class="nx">update</span><span class="p">({</span>
                    <span class="nx">color</span><span class="o">:</span> <span class="s1">'#e41a1c'</span>
                <span class="p">});</span> 
            <span class="p">}</span>
        <span class="p">},</span>
<span class="s2">"color"</span><span class="o">:</span> <span class="s2">"#e41a1c"</span><span class="p">,</span>
<span class="s2">"name"</span><span class="o">:</span> <span class="s2">"AR1"</span><span class="p">,</span>
<span class="s2">"type"</span><span class="o">:</span> <span class="kc">null</span><span class="p">,</span>
<span class="nx">dashStyle</span><span class="o">:</span> <span class="s1">'Solid'</span><span class="p">,</span>
<span class="s2">"marker"</span><span class="o">:</span> <span class="p">{</span>
 <span class="s2">"radius"</span><span class="o">:</span>              <span class="mi">6</span>
<span class="p">}</span> 
<span class="p">},</span>
<span class="p">{</span>
 <span class="s2">"data"</span><span class="o">:</span> <span class="p">[</span>
 <span class="p">[</span> <span class="s2">"Ind"</span><span class="p">,</span>
  <span class="mf">65.1</span> 
<span class="p">],</span>
<span class="p">[</span> <span class="s2">"AR1"</span><span class="p">,</span>
   <span class="mf">60.45</span> 
<span class="p">],</span>
<span class="p">[</span> <span class="s2">"MA1"</span><span class="p">,</span>
  <span class="mf">63.68</span> 
<span class="p">],</span>
<span class="p">[</span> <span class="s2">"MA2"</span><span class="p">,</span>
  <span class="mf">54.88</span> 
<span class="p">],</span>
<span class="p">[</span> <span class="s2">"ARMA"</span><span class="p">,</span>
   <span class="mf">63.6</span> 
<span class="p">]</span> 
<span class="p">],</span>
<span class="nx">events</span><span class="o">:</span> <span class="p">{</span>
            <span class="nx">mouseOver</span><span class="o">:</span> <span class="kd">function</span> <span class="p">()</span> <span class="p">{</span>
                <span class="k">this</span><span class="p">.</span><span class="nx">update</span><span class="p">({</span>
                    <span class="nx">color</span><span class="o">:</span> <span class="s1">'black'</span>
                <span class="p">});</span>                
            <span class="p">},</span>
            <span class="nx">mouseOut</span><span class="o">:</span> <span class="kd">function</span> <span class="p">()</span> <span class="p">{</span>
                <span class="k">this</span><span class="p">.</span><span class="nx">update</span><span class="p">({</span>
                    <span class="nx">color</span><span class="o">:</span> <span class="s1">'#377eb8'</span>
                <span class="p">});</span> 
            <span class="p">}</span>
        <span class="p">},</span>
<span class="s2">"color"</span><span class="o">:</span> <span class="s2">"#377eb8"</span><span class="p">,</span>
<span class="s2">"name"</span><span class="o">:</span> <span class="s2">"ARMA"</span><span class="p">,</span>
<span class="s2">"type"</span><span class="o">:</span> <span class="kc">null</span><span class="p">,</span>
<span class="nx">dashStyle</span><span class="o">:</span> <span class="s1">'ShortDash'</span><span class="p">,</span>
<span class="s2">"marker"</span><span class="o">:</span> <span class="p">{</span>
 <span class="s2">"radius"</span><span class="o">:</span>              <span class="mi">6</span> 
<span class="p">}</span> 
<span class="p">},</span>
<span class="p">{</span>
 <span class="s2">"data"</span><span class="o">:</span> <span class="p">[</span>
 <span class="p">[</span><span class="s2">"Ind"</span><span class="p">,</span>
  <span class="mf">72.48</span> 
<span class="p">],</span>
<span class="p">[</span> <span class="s2">"AR1"</span><span class="p">,</span>
  <span class="mf">93.88</span> 
<span class="p">],</span>
<span class="p">[</span> <span class="s2">"MA1"</span><span class="p">,</span>
  <span class="mf">92.23</span> 
<span class="p">],</span>
<span class="p">[</span> <span class="s2">"MA2"</span><span class="p">,</span>
  <span class="mf">95.62</span> 
<span class="p">],</span>
<span class="p">[</span> <span class="s2">"ARMA"</span><span class="p">,</span>
  <span class="mf">98.37</span> 
<span class="p">]</span> 
<span class="p">],</span>
<span class="nx">events</span><span class="o">:</span> <span class="p">{</span>
            <span class="nx">mouseOver</span><span class="o">:</span> <span class="kd">function</span> <span class="p">()</span> <span class="p">{</span>
                <span class="k">this</span><span class="p">.</span><span class="nx">update</span><span class="p">({</span>
                    <span class="nx">color</span><span class="o">:</span> <span class="s1">'black'</span>
                <span class="p">});</span>                
            <span class="p">},</span>
            <span class="nx">mouseOut</span><span class="o">:</span> <span class="kd">function</span> <span class="p">()</span> <span class="p">{</span>
                <span class="k">this</span><span class="p">.</span><span class="nx">update</span><span class="p">({</span>
                    <span class="nx">color</span><span class="o">:</span> <span class="s1">'#4daf4a'</span>
                <span class="p">});</span> 
            <span class="p">}</span>
        <span class="p">},</span>
<span class="s2">"color"</span><span class="o">:</span> <span class="s2">"#4daf4a"</span><span class="p">,</span>
<span class="s2">"name"</span><span class="o">:</span> <span class="s2">"Ind"</span><span class="p">,</span>
<span class="s2">"type"</span><span class="o">:</span> <span class="kc">null</span><span class="p">,</span>
<span class="nx">dashStyle</span><span class="o">:</span> <span class="s1">'Dash'</span><span class="p">,</span>
<span class="s2">"marker"</span><span class="o">:</span> <span class="p">{</span>
 <span class="s2">"radius"</span><span class="o">:</span>              <span class="mi">6</span> 
<span class="p">}</span> 
<span class="p">},</span>
<span class="p">{</span>
 <span class="s2">"data"</span><span class="o">:</span> <span class="p">[</span>
 <span class="p">[</span> <span class="s2">"Ind"</span><span class="p">,</span>
  <span class="mf">71.02</span> 
<span class="p">],</span>
<span class="p">[</span> <span class="s2">"AR1"</span><span class="p">,</span>
   <span class="mf">81.37</span> 
<span class="p">],</span>
<span class="p">[</span> <span class="s2">"MA1"</span><span class="p">,</span>
   <span class="mf">69.15</span> 
<span class="p">],</span>
<span class="p">[</span> <span class="s2">"MA2"</span><span class="p">,</span>
   <span class="mf">84.5</span> 
<span class="p">],</span>
<span class="p">[</span> <span class="s2">"ARMA"</span><span class="p">,</span>
   <span class="mf">88.02</span> 
<span class="p">]</span> 
<span class="p">],</span>
<span class="nx">events</span><span class="o">:</span> <span class="p">{</span>
            <span class="nx">mouseOver</span><span class="o">:</span> <span class="kd">function</span> <span class="p">()</span> <span class="p">{</span>
                <span class="k">this</span><span class="p">.</span><span class="nx">update</span><span class="p">({</span>
                    <span class="nx">color</span><span class="o">:</span> <span class="s1">'black'</span>
                <span class="p">});</span>                
            <span class="p">},</span>
            <span class="nx">mouseOut</span><span class="o">:</span> <span class="kd">function</span> <span class="p">()</span> <span class="p">{</span>
                <span class="k">this</span><span class="p">.</span><span class="nx">update</span><span class="p">({</span>
                    <span class="nx">color</span><span class="o">:</span> <span class="s1">'#984ea3'</span>
                <span class="p">});</span> 
            <span class="p">}</span>
        <span class="p">},</span>
<span class="s2">"color"</span><span class="o">:</span> <span class="s2">"#984ea3"</span><span class="p">,</span>
<span class="s2">"name"</span><span class="o">:</span> <span class="s2">"MA1"</span><span class="p">,</span>
<span class="s2">"type"</span><span class="o">:</span> <span class="kc">null</span><span class="p">,</span>
<span class="nx">dashStyle</span><span class="o">:</span> <span class="s1">'ShortDot'</span><span class="p">,</span>
<span class="s2">"marker"</span><span class="o">:</span> <span class="p">{</span>
 <span class="s2">"radius"</span><span class="o">:</span>              <span class="mi">6</span>
<span class="p">}</span> 
<span class="p">},</span>
<span class="p">{</span>
 <span class="s2">"data"</span><span class="o">:</span> <span class="p">[</span>
 <span class="p">[</span> <span class="s2">"Ind"</span><span class="p">,</span>
   <span class="mf">67.23</span> 
<span class="p">],</span>
<span class="p">[</span> <span class="s2">"AR1"</span><span class="p">,</span>
   <span class="mf">70.78</span> 
<span class="p">],</span>
<span class="p">[</span> <span class="s2">"MA1"</span><span class="p">,</span>
   <span class="mf">65.93</span> 
<span class="p">],</span>
<span class="p">[</span> <span class="s2">"MA2"</span><span class="p">,</span>
   <span class="mf">68.83</span> 
<span class="p">],</span>
<span class="p">[</span> <span class="s2">"ARMA"</span><span class="p">,</span>
   <span class="mf">72.9</span> 
<span class="p">]</span> 
<span class="p">],</span>
<span class="nx">events</span><span class="o">:</span> <span class="p">{</span>
            <span class="nx">mouseOver</span><span class="o">:</span> <span class="kd">function</span> <span class="p">()</span> <span class="p">{</span>
                <span class="k">this</span><span class="p">.</span><span class="nx">update</span><span class="p">({</span>
                    <span class="nx">color</span><span class="o">:</span> <span class="s1">'black'</span>
                <span class="p">});</span>                
            <span class="p">},</span>
            <span class="nx">mouseOut</span><span class="o">:</span> <span class="kd">function</span> <span class="p">()</span> <span class="p">{</span>
                <span class="k">this</span><span class="p">.</span><span class="nx">update</span><span class="p">({</span>
                    <span class="nx">color</span><span class="o">:</span> <span class="s1">'#ff7f00'</span>
                <span class="p">});</span> 
            <span class="p">}</span>
        <span class="p">},</span>
<span class="s2">"color"</span><span class="o">:</span> <span class="s2">"#ff7f00"</span><span class="p">,</span>
<span class="s2">"name"</span><span class="o">:</span> <span class="s2">"MA2"</span><span class="p">,</span>
<span class="s2">"type"</span><span class="o">:</span> <span class="kc">null</span><span class="p">,</span>
<span class="nx">dashStyle</span><span class="o">:</span> <span class="s1">'DashDot'</span><span class="p">,</span>
<span class="s2">"marker"</span><span class="o">:</span> <span class="p">{</span>
 <span class="s2">"radius"</span><span class="o">:</span>              <span class="mi">6</span> 
<span class="p">}</span> 
<span class="p">}</span> 
<span class="p">],</span>
<span class="s2">"xAxis"</span><span class="o">:</span> <span class="p">[</span>
 <span class="p">{</span>
 <span class="nx">title</span><span class="o">:</span> <span class="p">{</span>
 <span class="nx">text</span><span class="o">:</span> <span class="s2">"Generated Serial Correlation Structure"</span><span class="p">,</span>
  <span class="nx">style</span><span class="o">:</span><span class="p">{</span>
   <span class="nx">fontWeight</span><span class="o">:</span> <span class="s1">'bold'</span><span class="p">,</span>
   <span class="nx">fontSize</span><span class="o">:</span> <span class="s1">'20px'</span>
 <span class="p">}</span>
<span class="p">},</span>
<span class="nx">labels</span><span class="o">:</span> <span class="p">{</span>
 <span class="nx">style</span><span class="o">:</span> <span class="p">{</span>
  <span class="nx">fontSize</span><span class="o">:</span> <span class="s1">'18px'</span><span class="p">,</span>
  <span class="nx">fontWeight</span><span class="o">:</span> <span class="s1">'bold'</span>
 <span class="p">}</span>
<span class="p">},</span>
<span class="s2">"categories"</span><span class="o">:</span> <span class="p">[</span> <span class="s2">"Ind"</span><span class="p">,</span> <span class="s2">"AR1"</span><span class="p">,</span> <span class="s2">"MA1"</span><span class="p">,</span> <span class="s2">"MA2"</span><span class="p">,</span> <span class="s2">"ARMA"</span> <span class="p">]</span> 
<span class="p">}</span> 
<span class="p">],</span>
<span class="s2">"subtitle"</span><span class="o">:</span> <span class="p">{</span>
 <span class="s2">"text"</span><span class="o">:</span> <span class="kc">null</span> 
<span class="p">},</span>
<span class="s2">"legend"</span><span class="o">:</span> <span class="p">{</span>
 <span class="s2">"verticalAlign"</span><span class="o">:</span> <span class="s2">"top"</span><span class="p">,</span>
<span class="s2">"align"</span><span class="o">:</span> <span class="s2">"right"</span><span class="p">,</span>
<span class="s2">"layout"</span><span class="o">:</span> <span class="s2">"vertical"</span><span class="p">,</span>
<span class="nx">symbolWidth</span><span class="o">:</span> <span class="mi">40</span><span class="p">,</span>
<span class="s2">"title"</span><span class="o">:</span> <span class="p">{</span>
 <span class="s2">"text"</span><span class="o">:</span> <span class="s2">"Fitted SC"</span> 
<span class="p">}</span> 
<span class="p">},</span>
<span class="s2">"plotOptions"</span><span class="o">:</span> <span class="p">{</span>
 <span class="s2">"series"</span><span class="o">:</span> <span class="p">{</span>
 <span class="s2">"lineWidth"</span><span class="o">:</span>   <span class="mi">4</span> 
<span class="p">}</span> 
<span class="p">},</span>
<span class="s2">"id"</span><span class="o">:</span> <span class="s2">"chart1"</span><span class="p">,</span>
<span class="s2">"chart"</span><span class="o">:</span> <span class="p">{</span>
 <span class="s2">"renderTo"</span><span class="o">:</span> <span class="s2">"chart1"</span><span class="p">,</span> 
 <span class="nx">zoomType</span><span class="o">:</span> <span class="s2">"y"</span><span class="p">,</span>
 <span class="s2">"style"</span><span class="o">:</span> <span class="p">{</span>
 <span class="nx">fontSize</span><span class="o">:</span> <span class="s2">"24px"</span>
 <span class="p">},</span>
 <span class="nx">resetZoomButton</span><span class="o">:</span> <span class="p">{</span>
  <span class="nx">position</span><span class="o">:</span> <span class="p">{</span>
   <span class="nx">align</span><span class="o">:</span> <span class="s1">'left'</span>
  <span class="p">}</span>
 <span class="p">}</span>
<span class="p">}</span> 
<span class="p">});</span>
        <span class="p">});</span>
    <span class="p">})(</span><span class="nx">jQuery</span><span class="p">);</span>
<span class="o"><</span><span class="err">/script></span>

Once you have that in markdown format, you can turn it into a slidy html presentation with the following command in pandoc:

pandoc -s --mathjax -i -t slidy inputfile.md -o outfile.html

This gives you a file that looks something like this:

<span class="cp"><?xml version="1.0" encoding="utf-8"?></span>
<span class="cp"><!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN"</span>
<span class="cp"> "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"></span>
<span class="nt"><html</span> <span class="na">xmlns=</span><span class="s">"http://www.w3.org/1999/xhtml"</span><span class="nt">></span>
<span class="nt"><head></span>
  <span class="nt"><meta</span> <span class="na">http-equiv=</span><span class="s">"Content-Type"</span> <span class="na">content=</span><span class="s">"text/html; charset=utf-8"</span> <span class="nt">/></span>
  <span class="nt"><meta</span> <span class="na">http-equiv=</span><span class="s">"Content-Style-Type"</span> <span class="na">content=</span><span class="s">"text/css"</span> <span class="nt">/></span>
  <span class="nt"><meta</span> <span class="na">name=</span><span class="s">"generator"</span> <span class="na">content=</span><span class="s">"pandoc"</span> <span class="nt">/></span>
  <span class="nt"><meta</span> <span class="na">name=</span><span class="s">"author"</span> <span class="na">content=</span><span class="s">"Your Name"</span> <span class="nt">/></span>
  <span class="nt"><title></span>Witty Title<span class="nt"></title></span>
  <span class="nt"><style </span><span class="na">type=</span><span class="s">"text/css"</span><span class="nt">>code</span><span class="p">{</span><span class="k">white-space</span><span class="o">:</span> <span class="n">pre</span><span class="p">;}</span><span class="nt"></style></span>
  <span class="nt"><link</span> <span class="na">rel=</span><span class="s">"stylesheet"</span> <span class="na">type=</span><span class="s">"text/css"</span> <span class="na">media=</span><span class="s">"screen, projection, print"</span>
    <span class="na">href=</span><span class="s">"http://www.w3.org/Talks/Tools/Slidy2/styles/slidy.css"</span> <span class="nt">/></span>
<span class="nt"><script </span><span class="na">src=</span><span class="s">"http://www.w3.org/Talks/Tools/Slidy2/scripts/slidy.js"</span>
    <span class="na">charset=</span><span class="s">"utf-8"</span> <span class="na">type=</span><span class="s">"text/javascript"</span><span class="nt">></script></span>
<span class="nt"><script </span><span class="na">type=</span><span class="s">'text/javascript'</span> <span class="na">src=</span><span class="s">http://code.jquery.com/jquery-1.9.1.min.js</span><span class="nt">></script></span>
<span class="nt"><script </span><span class="na">type=</span><span class="s">'text/javascript'</span> <span class="na">src=</span><span class="s">http://code.highcharts.com/highcharts.js</span><span class="nt">></script></span>
<span class="nt"><script </span><span class="na">type=</span><span class="s">'text/javascript'</span> <span class="na">src=</span><span class="s">http://code.highcharts.com/highcharts-more.js</span><span class="nt">></script></span>
<span class="nt"><script </span><span class="na">type=</span><span class="s">'text/javascript'</span> <span class="na">src=</span><span class="s">http://code.highcharts.com/modules/exporting.js</span><span class="nt">></script></span>
 <span class="nt"><style></span>
  <span class="nc">.rChart</span> <span class="p">{</span>
    <span class="k">display</span><span class="o">:</span> <span class="k">block</span><span class="p">;</span>
    <span class="k">margin-left</span><span class="o">:</span> <span class="k">auto</span><span class="p">;</span> 
    <span class="k">margin-right</span><span class="o">:</span> <span class="k">auto</span><span class="p">;</span>
    <span class="k">width</span><span class="o">:</span> <span class="m">1000px</span><span class="p">;</span>
    <span class="k">height</span><span class="o">:</span> <span class="m">800px</span><span class="p">;</span>
    <span class="k">font-size</span><span class="o">:</span> <span class="m">200</span><span class="o">%</span><span class="p">;</span>
  <span class="p">}</span>  
  <span class="nt"></style></span>
<span class="nt"><script </span><span class="na">src=</span><span class="s">"http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"</span> <span class="na">type=</span><span class="s">"text/javascript"</span><span class="nt">></span><span class="nx">MathJax</span><span class="p">.</span><span class="nx">Hub</span><span class="p">.</span><span class="nx">Queue</span><span class="p">([</span><span class="s2">"Typeset"</span><span class="p">,</span><span class="nx">MathJax</span><span class="p">.</span><span class="nx">Hub</span><span class="p">]);</span><span class="nt"></script></span>
 <span class="c"><!--   <script src="http://www.w3.org/Talks/Tools/Slidy2/scripts/slidy.js"</span>
<span class="c">    charset="utf-8" type="text/javascript"></script> --></span>
<span class="nt"></head></span>
<span class="nt"><body></span>
<span class="nt"><div</span> <span class="na">id =</span><span class="err"> </span><span class="s">'chart1'</span> <span class="na">class =</span><span class="err"> </span><span class="s">'rChart'</span><span class="nt">></div></span>
<span class="nt"><script </span><span class="na">type=</span><span class="s">'text/javascript'</span><span class="nt">></span>
    <span class="p">(</span><span class="kd">function</span><span class="p">(</span><span class="nx">$</span><span class="p">){</span>
        <span class="nx">$</span><span class="p">(</span><span class="kd">function</span> <span class="p">()</span> <span class="p">{</span>
            <span class="kd">var</span> <span class="nx">chart</span> <span class="o">=</span> <span class="k">new</span> <span class="nx">Highcharts</span><span class="p">.</span><span class="nx">Chart</span><span class="p">({</span>
 <span class="s2">"dom"</span><span class="o">:</span> <span class="s2">"chart1"</span><span class="p">,</span>
<span class="s2">"width"</span><span class="o">:</span>            <span class="mi">1000</span><span class="p">,</span>
<span class="s2">"height"</span><span class="o">:</span>            <span class="mi">600</span><span class="p">,</span>
<span class="s2">"credits"</span><span class="o">:</span> <span class="p">{</span>
 <span class="s2">"href"</span><span class="o">:</span> <span class="kc">null</span><span class="p">,</span>
<span class="s2">"text"</span><span class="o">:</span> <span class="kc">null</span> 
<span class="p">},</span>
<span class="s2">"exporting"</span><span class="o">:</span> <span class="p">{</span>
 <span class="s2">"enabled"</span><span class="o">:</span> <span class="kc">false</span> 
<span class="p">},</span>
<span class="s2">"title"</span><span class="o">:</span> <span class="p">{</span>
 <span class="s2">"text"</span><span class="o">:</span> <span class="kc">null</span> 
<span class="p">},</span>
<span class="s2">"yAxis"</span><span class="o">:</span> <span class="p">[</span>
 <span class="p">{</span>
 <span class="nx">title</span><span class="o">:</span> <span class="p">{</span>
 <span class="nx">text</span><span class="o">:</span> <span class="s2">"Convergence Rate"</span><span class="p">,</span>
  <span class="nx">style</span><span class="o">:</span> <span class="p">{</span>
   <span class="nx">fontWeight</span><span class="o">:</span> <span class="s1">'bold'</span><span class="p">,</span>
   <span class="nx">fontSize</span><span class="o">:</span> <span class="s1">'20px'</span>
   <span class="p">}</span>
 <span class="p">},</span>
 <span class="nx">labels</span><span class="o">:</span> <span class="p">{</span>
  <span class="nx">formatter</span><span class="o">:</span> <span class="kd">function</span><span class="p">()</span> <span class="p">{</span>
   <span class="k">return</span> <span class="k">this</span><span class="p">.</span><span class="nx">value</span> <span class="o">+</span> <span class="s1">'%'</span><span class="p">;</span>
  <span class="p">},</span>
  <span class="nx">style</span><span class="o">:</span> <span class="p">{</span>
   <span class="nx">fontSize</span><span class="o">:</span> <span class="s1">'18px'</span>
  <span class="p">}</span>
 <span class="p">},</span>
<span class="s2">"min"</span><span class="o">:</span>              <span class="mi">0</span><span class="p">,</span>
<span class="s2">"max"</span><span class="o">:</span>            <span class="mi">100</span><span class="p">,</span>
<span class="s2">"tickInterval"</span><span class="o">:</span>             <span class="mi">10</span> <span class="p">,</span>
<span class="nx">minRange</span><span class="o">:</span> <span class="mi">10</span>
<span class="p">}</span> 
<span class="p">],</span>
<span class="s2">"series"</span><span class="o">:</span> <span class="p">[</span>
 <span class="p">{</span>
 <span class="s2">"data"</span><span class="o">:</span> <span class="p">[</span>
 <span class="p">[</span> <span class="s2">"Ind"</span><span class="p">,</span>
  <span class="mf">68.38</span> 
<span class="p">],</span>
<span class="p">[</span> <span class="s2">"AR1"</span><span class="p">,</span>
  <span class="mf">64.88</span> 
<span class="p">],</span>
<span class="p">[</span> <span class="s2">"MA1"</span><span class="p">,</span>
  <span class="mf">55.12</span> 
<span class="p">],</span>
<span class="p">[</span> <span class="s2">"MA2"</span><span class="p">,</span>
  <span class="mf">61.98</span> 
<span class="p">],</span>
<span class="p">[</span> <span class="s2">"ARMA"</span><span class="p">,</span>
  <span class="mf">42.17</span> 
<span class="p">]</span> 
<span class="p">],</span>
<span class="nx">events</span><span class="o">:</span> <span class="p">{</span>
            <span class="nx">mouseOver</span><span class="o">:</span> <span class="kd">function</span> <span class="p">()</span> <span class="p">{</span>
                <span class="k">this</span><span class="p">.</span><span class="nx">update</span><span class="p">({</span>
                    <span class="nx">color</span><span class="o">:</span> <span class="s1">'black'</span>
                <span class="p">});</span>                
            <span class="p">},</span>
            <span class="nx">mouseOut</span><span class="o">:</span> <span class="kd">function</span> <span class="p">()</span> <span class="p">{</span>
                <span class="k">this</span><span class="p">.</span><span class="nx">update</span><span class="p">({</span>
                    <span class="nx">color</span><span class="o">:</span> <span class="s1">'#e41a1c'</span>
                <span class="p">});</span> 
            <span class="p">}</span>
        <span class="p">},</span>
<span class="s2">"color"</span><span class="o">:</span> <span class="s2">"#e41a1c"</span><span class="p">,</span>
<span class="s2">"name"</span><span class="o">:</span> <span class="s2">"AR1"</span><span class="p">,</span>
<span class="s2">"type"</span><span class="o">:</span> <span class="kc">null</span><span class="p">,</span>
<span class="nx">dashStyle</span><span class="o">:</span> <span class="s1">'Solid'</span><span class="p">,</span>
<span class="s2">"marker"</span><span class="o">:</span> <span class="p">{</span>
 <span class="s2">"radius"</span><span class="o">:</span>              <span class="mi">6</span>
<span class="p">}</span> 
<span class="p">},</span>
<span class="p">{</span>
 <span class="s2">"data"</span><span class="o">:</span> <span class="p">[</span>
 <span class="p">[</span> <span class="s2">"Ind"</span><span class="p">,</span>
  <span class="mf">65.1</span> 
<span class="p">],</span>
<span class="p">[</span> <span class="s2">"AR1"</span><span class="p">,</span>
  <span class="mf">60.45</span> 
<span class="p">],</span>
<span class="p">[</span> <span class="s2">"MA1"</span><span class="p">,</span>
  <span class="mf">63.68</span> 
<span class="p">],</span>
<span class="p">[</span> <span class="s2">"MA2"</span><span class="p">,</span>
  <span class="mf">54.88</span> 
<span class="p">],</span>
<span class="p">[</span> <span class="s2">"ARMA"</span><span class="p">,</span>
   <span class="mf">63.6</span> 
<span class="p">]</span> 
<span class="p">],</span>
<span class="nx">events</span><span class="o">:</span> <span class="p">{</span>
            <span class="nx">mouseOver</span><span class="o">:</span> <span class="kd">function</span> <span class="p">()</span> <span class="p">{</span>
                <span class="k">this</span><span class="p">.</span><span class="nx">update</span><span class="p">({</span>
                    <span class="nx">color</span><span class="o">:</span> <span class="s1">'black'</span>
                <span class="p">});</span>                
            <span class="p">},</span>
            <span class="nx">mouseOut</span><span class="o">:</span> <span class="kd">function</span> <span class="p">()</span> <span class="p">{</span>
                <span class="k">this</span><span class="p">.</span><span class="nx">update</span><span class="p">({</span>
                    <span class="nx">color</span><span class="o">:</span> <span class="s1">'#377eb8'</span>
                <span class="p">});</span> 
            <span class="p">}</span>
        <span class="p">},</span>
<span class="s2">"color"</span><span class="o">:</span> <span class="s2">"#377eb8"</span><span class="p">,</span>
<span class="s2">"name"</span><span class="o">:</span> <span class="s2">"ARMA"</span><span class="p">,</span>
<span class="s2">"type"</span><span class="o">:</span> <span class="kc">null</span><span class="p">,</span>
<span class="nx">dashStyle</span><span class="o">:</span> <span class="s1">'ShortDash'</span><span class="p">,</span>
<span class="s2">"marker"</span><span class="o">:</span> <span class="p">{</span>
 <span class="s2">"radius"</span><span class="o">:</span>              <span class="mi">6</span> 
<span class="p">}</span> 
<span class="p">},</span>
<span class="p">{</span>
 <span class="s2">"data"</span><span class="o">:</span> <span class="p">[</span>
 <span class="p">[</span> <span class="s2">"Ind"</span><span class="p">,</span>
  <span class="mf">72.48</span> 
<span class="p">],</span>
<span class="p">[</span> <span class="s2">"AR1"</span><span class="p">,</span>
  <span class="mf">93.88</span> 
<span class="p">],</span>
<span class="p">[</span> <span class="s2">"MA1"</span><span class="p">,</span>
   <span class="mf">92.23</span> 
<span class="p">],</span>
<span class="p">[</span> <span class="s2">"MA2"</span><span class="p">,</span>
   <span class="mf">95.62</span> 
<span class="p">],</span>
<span class="p">[</span> <span class="s2">"ARMA"</span><span class="p">,</span>
   <span class="mf">98.37</span> 
<span class="p">]</span> 
<span class="p">],</span>
<span class="nx">events</span><span class="o">:</span> <span class="p">{</span>
            <span class="nx">mouseOver</span><span class="o">:</span> <span class="kd">function</span> <span class="p">()</span> <span class="p">{</span>
                <span class="k">this</span><span class="p">.</span><span class="nx">update</span><span class="p">({</span>
                    <span class="nx">color</span><span class="o">:</span> <span class="s1">'black'</span>
                <span class="p">});</span>                
            <span class="p">},</span>
            <span class="nx">mouseOut</span><span class="o">:</span> <span class="kd">function</span> <span class="p">()</span> <span class="p">{</span>
                <span class="k">this</span><span class="p">.</span><span class="nx">update</span><span class="p">({</span>
                    <span class="nx">color</span><span class="o">:</span> <span class="s1">'#4daf4a'</span>
                <span class="p">});</span> 
            <span class="p">}</span>
        <span class="p">},</span>
<span class="s2">"color"</span><span class="o">:</span> <span class="s2">"#4daf4a"</span><span class="p">,</span>
<span class="s2">"name"</span><span class="o">:</span> <span class="s2">"Ind"</span><span class="p">,</span>
<span class="s2">"type"</span><span class="o">:</span> <span class="kc">null</span><span class="p">,</span>
<span class="nx">dashStyle</span><span class="o">:</span> <span class="s1">'Dash'</span><span class="p">,</span>
<span class="s2">"marker"</span><span class="o">:</span> <span class="p">{</span>
 <span class="s2">"radius"</span><span class="o">:</span>              <span class="mi">6</span> 
<span class="p">}</span> 
<span class="p">},</span>
<span class="p">{</span>
 <span class="s2">"data"</span><span class="o">:</span> <span class="p">[</span>
 <span class="p">[</span> <span class="s2">"Ind"</span><span class="p">,</span>
   <span class="mf">71.02</span> 
<span class="p">],</span>
<span class="p">[</span> <span class="s2">"AR1"</span><span class="p">,</span>
   <span class="mf">81.37</span> 
<span class="p">],</span>
<span class="p">[</span> <span class="s2">"MA1"</span><span class="p">,</span>
   <span class="mf">69.15</span> 
<span class="p">],</span>
<span class="p">[</span> <span class="s2">"MA2"</span><span class="p">,</span>
   <span class="mf">84.5</span> 
<span class="p">],</span>
<span class="p">[</span> <span class="s2">"ARMA"</span><span class="p">,</span>
   <span class="mf">88.02</span> 
<span class="p">]</span> 
<span class="p">],</span>
<span class="nx">events</span><span class="o">:</span> <span class="p">{</span>
            <span class="nx">mouseOver</span><span class="o">:</span> <span class="kd">function</span> <span class="p">()</span> <span class="p">{</span>
                <span class="k">this</span><span class="p">.</span><span class="nx">update</span><span class="p">({</span>
                    <span class="nx">color</span><span class="o">:</span> <span class="s1">'black'</span>
                <span class="p">});</span>                
            <span class="p">},</span>
            <span class="nx">mouseOut</span><span class="o">:</span> <span class="kd">function</span> <span class="p">()</span> <span class="p">{</span>
                <span class="k">this</span><span class="p">.</span><span class="nx">update</span><span class="p">({</span>
                    <span class="nx">color</span><span class="o">:</span> <span class="s1">'#984ea3'</span>
                <span class="p">});</span> 
            <span class="p">}</span>
        <span class="p">},</span>
<span class="s2">"color"</span><span class="o">:</span> <span class="s2">"#984ea3"</span><span class="p">,</span>
<span class="s2">"name"</span><span class="o">:</span> <span class="s2">"MA1"</span><span class="p">,</span>
<span class="s2">"type"</span><span class="o">:</span> <span class="kc">null</span><span class="p">,</span>
<span class="nx">dashStyle</span><span class="o">:</span> <span class="s1">'ShortDot'</span><span class="p">,</span>
<span class="s2">"marker"</span><span class="o">:</span> <span class="p">{</span>
 <span class="s2">"radius"</span><span class="o">:</span>              <span class="mi">6</span>
<span class="p">}</span> 
<span class="p">},</span>
<span class="p">{</span>
 <span class="s2">"data"</span><span class="o">:</span> <span class="p">[</span>
 <span class="p">[</span> <span class="s2">"Ind"</span><span class="p">,</span>
   <span class="mf">67.23</span> 
<span class="p">],</span>
<span class="p">[</span> <span class="s2">"AR1"</span><span class="p">,</span>
   <span class="mf">70.78</span> 
<span class="p">],</span>
<span class="p">[</span> <span class="s2">"MA1"</span><span class="p">,</span>
   <span class="mf">65.93</span> 
<span class="p">],</span>
<span class="p">[</span> <span class="s2">"MA2"</span><span class="p">,</span>
   <span class="mf">68.83</span> 
<span class="p">],</span>
<span class="p">[</span> <span class="s2">"ARMA"</span><span class="p">,</span>
    <span class="mf">72.9</span> 
<span class="p">]</span> 
<span class="p">],</span>
<span class="nx">events</span><span class="o">:</span> <span class="p">{</span>
            <span class="nx">mouseOver</span><span class="o">:</span> <span class="kd">function</span> <span class="p">()</span> <span class="p">{</span>
                <span class="k">this</span><span class="p">.</span><span class="nx">update</span><span class="p">({</span>
                    <span class="nx">color</span><span class="o">:</span> <span class="s1">'black'</span>
                <span class="p">});</span>                
            <span class="p">},</span>
            <span class="nx">mouseOut</span><span class="o">:</span> <span class="kd">function</span> <span class="p">()</span> <span class="p">{</span>
                <span class="k">this</span><span class="p">.</span><span class="nx">update</span><span class="p">({</span>
                    <span class="nx">color</span><span class="o">:</span> <span class="s1">'#ff7f00'</span>
                <span class="p">});</span> 
            <span class="p">}</span>
        <span class="p">},</span>
<span class="s2">"color"</span><span class="o">:</span> <span class="s2">"#ff7f00"</span><span class="p">,</span>
<span class="s2">"name"</span><span class="o">:</span> <span class="s2">"MA2"</span><span class="p">,</span>
<span class="s2">"type"</span><span class="o">:</span> <span class="kc">null</span><span class="p">,</span>
<span class="nx">dashStyle</span><span class="o">:</span> <span class="s1">'DashDot'</span><span class="p">,</span>
<span class="s2">"marker"</span><span class="o">:</span> <span class="p">{</span>
 <span class="s2">"radius"</span><span class="o">:</span>              <span class="mi">6</span> 
<span class="p">}</span> 
<span class="p">}</span> 
<span class="p">],</span>
<span class="s2">"xAxis"</span><span class="o">:</span> <span class="p">[</span>
 <span class="p">{</span>
 <span class="nx">title</span><span class="o">:</span> <span class="p">{</span>
 <span class="nx">text</span><span class="o">:</span> <span class="s2">"Generated Serial Correlation Structure"</span><span class="p">,</span>
  <span class="nx">style</span><span class="o">:</span><span class="p">{</span>
   <span class="nx">fontWeight</span><span class="o">:</span> <span class="s1">'bold'</span><span class="p">,</span>
   <span class="nx">fontSize</span><span class="o">:</span> <span class="s1">'20px'</span>
 <span class="p">}</span>
<span class="p">},</span>
<span class="nx">labels</span><span class="o">:</span> <span class="p">{</span>
 <span class="nx">style</span><span class="o">:</span> <span class="p">{</span>
  <span class="nx">fontSize</span><span class="o">:</span> <span class="s1">'18px'</span><span class="p">,</span>
  <span class="nx">fontWeight</span><span class="o">:</span> <span class="s1">'bold'</span>
 <span class="p">}</span>
<span class="p">},</span>
<span class="s2">"categories"</span><span class="o">:</span> <span class="p">[</span> <span class="s2">"Ind"</span><span class="p">,</span> <span class="s2">"AR1"</span><span class="p">,</span> <span class="s2">"MA1"</span><span class="p">,</span> <span class="s2">"MA2"</span><span class="p">,</span> <span class="s2">"ARMA"</span> <span class="p">]</span> 
<span class="p">}</span> 
<span class="p">],</span>
<span class="s2">"subtitle"</span><span class="o">:</span> <span class="p">{</span>
 <span class="s2">"text"</span><span class="o">:</span> <span class="kc">null</span> 
<span class="p">},</span>
<span class="s2">"legend"</span><span class="o">:</span> <span class="p">{</span>
 <span class="s2">"verticalAlign"</span><span class="o">:</span> <span class="s2">"top"</span><span class="p">,</span>
<span class="s2">"align"</span><span class="o">:</span> <span class="s2">"right"</span><span class="p">,</span>
<span class="s2">"layout"</span><span class="o">:</span> <span class="s2">"vertical"</span><span class="p">,</span>
<span class="nx">symbolWidth</span><span class="o">:</span> <span class="mi">40</span><span class="p">,</span>
<span class="s2">"title"</span><span class="o">:</span> <span class="p">{</span>
 <span class="s2">"text"</span><span class="o">:</span> <span class="s2">"Fitted SC"</span> 
<span class="p">}</span> 
<span class="p">},</span>
<span class="s2">"plotOptions"</span><span class="o">:</span> <span class="p">{</span>
 <span class="s2">"series"</span><span class="o">:</span> <span class="p">{</span>
 <span class="s2">"lineWidth"</span><span class="o">:</span>              <span class="mi">4</span> 
<span class="p">}</span> 
<span class="p">},</span>
<span class="s2">"id"</span><span class="o">:</span> <span class="s2">"chart1"</span><span class="p">,</span>
<span class="s2">"chart"</span><span class="o">:</span> <span class="p">{</span>
 <span class="s2">"renderTo"</span><span class="o">:</span> <span class="s2">"chart1"</span><span class="p">,</span> 
 <span class="nx">zoomType</span><span class="o">:</span> <span class="s2">"y"</span><span class="p">,</span>
 <span class="s2">"style"</span><span class="o">:</span> <span class="p">{</span>
 <span class="nx">fontSize</span><span class="o">:</span> <span class="s2">"24px"</span>
 <span class="p">},</span>
 <span class="nx">resetZoomButton</span><span class="o">:</span> <span class="p">{</span>
  <span class="nx">position</span><span class="o">:</span> <span class="p">{</span>
   <span class="nx">align</span><span class="o">:</span> <span class="s1">'left'</span>
  <span class="p">}</span>
 <span class="p">}</span>
<span class="p">}</span> 
<span class="p">});</span>
        <span class="p">});</span>
    <span class="p">})(</span><span class="nx">jQuery</span><span class="p">);</span>
<span class="nt"></script></span>
<span class="nt"></div></span>
<span class="nt"></body></span>
<span class="nt"></html></span>

That should give you a html presentation with an interactive Javascript based figure.

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