Posts Tagged ‘ velvet ’

Standardized Velvet Assembly Report

August 25, 2009
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Standardized Velvet Assembly Report

http://code.google.com/p/standardized-velvet-assembly-report/I finally got my Velvet Assembler report script up on google code. This "program" consists of some short scripts and a Sweave report designed to help Velvet users identify the optimal kmer an...

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Calculating an N50 from Velvet output

November 25, 2008
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Calculating an N50 from Velvet output

In sequencing circles the N50 length is a useful heuristic for judging the quality of an assembly. Here is my definition of N50 length, which you may or may not find intuitive:N50 length is the length of the shortest contig such that the sum of contigs...

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