Posts Tagged ‘ ggplot2 ’

Transforming a color scale

October 3, 2012
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Transforming a color scale

In developing plots, I often use color (or “colour” in ggplot2 parlance) to reflect values of a third, non-X/Y, variable. Depending on the distribution of this Z variable, however, the effective color range can be narrow, making it difficul...

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A replacement for theme_blank()

October 2, 2012
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A replacement for theme_blank()

ggplot2 has just hit 0.9.2, and with the change comes a new theme system. Previous versions of ggplot2 offered a theme_blank(), which was a stripped-down, essentially blank plotting canvas, but it is now deprecated. github user jrnold has produced a s...

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Optimal seriation for your matrices

September 28, 2012
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Optimal seriation for your matrices

In our previous post, we used a quick-and-dirty method for ordering the axes on our heatmap. It has been pointed out to me that There is a Package for That (which is my nominee for a new slogan for R — not that it needs a slogan). seriation offe...

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Simplest possible heatmap with ggplot2

September 27, 2012
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Simplest possible heatmap with ggplot2

Featuring the lovely “spectral” palette from Colorbrewer. This really just serves as a reminder of how to do four things I frequently want to do: Make a heatmap of some kind of matrix, often a square correlation matrix Reorder a factor vari...

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Visually-weighted regression plots, with Zelig

September 25, 2012
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Visually-weighted regression plots, with Zelig

As a follow-up to yesterday’s post on producing visually-weighted regression plots, here is some code which illustrates the production of similar plots, but using Zelig’s convenient modeling and simulation functions. This code was produced...

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Simple visually-weighted regression plots

September 24, 2012
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Simple visually-weighted regression plots

There has recently been a lot of discussion of so-called “visually-weighted regression” plots. Folk hero Hadley Wickham suggests that such plots would be easy to implement with ggplot2, and so I have attempted to prove him right. The approa...

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Automatic drug utilization reports with R and ggplot2

September 18, 2012
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Automatic drug utilization reports with R and ggplot2

This program takes a data set of drug utilisation of 4 fictional drugs in 10 fictional hospitals and plots each time-series with a locally weighted regression (Lowess) trend line. It also places an time-series trend of the usage for each … Continue reading →

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Add Text Annotations to ggplot2 Faceted Plot (an easier approach)

September 6, 2012
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Add Text Annotations to ggplot2 Faceted Plot (an easier approach)

I recently posted a blog about adding text to a ggplot2 faceted plot (LINK). I was unhappy with the amount of time it takes to create the text data frame to then label the plot. And then yesterday when the … Continue reading →

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Add Text Annotations to ggplot2 Faceted Plot

August 31, 2012
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Add Text Annotations to ggplot2 Faceted Plot

In my experience with R learners there are two basic types. The “show me the code and what it does and let me play” type and the “please give me step by step directions” type. I’ve broken the following tutorial … Continue reading →

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Genetic algorithms: a simple R example

August 1, 2012
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Genetic algorithms: a simple R example

Genetic algorithm is a search heuristic. GAs can generate a vast number of possible model solutions and use these to evolve towards an approximation of the best solution of the model. Hereby it mimics evolution in nature. GA generates a population, the individuals in this population (often called chromosomes) have  Read more »