(This article was first published on Vincent Zoonekynd's Blog, and kindly contributed to R-bloggers)
I have just uploaded the new version of my "Statistics with R":
http://zoonek2.free.fr/UNIX/48_R/all.html
The previous version was one year and a half old, so in spite of the fact I have not had much time to devote to it in the past two years, it might have changed quite a bit -- but it remains as incomplete as ever.
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Zero Inflated Models and Generalized Linear Mixed Models with R.
Zuur, Saveliev, Ieno (2012).