162 search results for "web scraping"

Scraping SSL Labs Server Test Results With R

April 29, 2014
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NOTE: Qualys allows automated access to their SSL Server Test site in their T&C’s, and the R fucntion/script provided here does its best to adhere to their guidelines. However, if you launch multiple scripts at one time and catch their attention you will, no doubt, be banned. This post will show you how to do some basic web page data...

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Interfacing R with Web technologies

April 14, 2014
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A new Task View on CRAN will be of anyone who needs to connect R with Web-based applications. The Web Technologies and Services Task View lists R functions and pacakges for reading data from websites (via public APIs or by scraping data from HTML packegs); for interfacing with Cloud-based platforms (including AWS); for authenticating and accessing data from social...

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Scraping organism metadata for Treebase repositories from GOLD using Python and R

Scraping organism metadata for Treebase repositories from GOLD using Python and R I recently wanted to get hold of habitat/phenotype/sequencing metadata for the individual organisms of an archived Treebase project.) The GOLD database holds more than 18000 full genomes. For many of these it provides pretty good metadata (GOLDcards) which are indirectly linked to...

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R-Bloggers’ Web-Presence

April 6, 2012
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We love them, we hate them: RANKINGS!Rankings are an inevitable tool to keep the human rat race going. In this regard I'll pick up my last two posts (HERE & HERE) and have some fun with it by using it to analyse R-Bloggers' web presence. I will use...

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How-to Extract Text From Multiple Websites with R

February 18, 2012
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How-to Extract Text From Multiple Websites with R

I have been meaning to post this slideshow for awhile now. It gives a brief introduction to using R for scraping text from multiple websites. It includes some basic debugging, because R sometimes misses a website.Just click the arrows to change the sli...

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Scraping Flora of North America

January 27, 2012
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So Flora of North America is an awesome collection of taxonomic information for plants across the continent. However, the information within is not easily machine readable. So, a little web scraping is called for. rfna is an R package to collect inf...

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Scraping R-bloggers with Python – Part 2

January 5, 2012
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In my previous post I showed how to write a small simple python script to download the pages of R-bloggers.com. If you followed that post and ran the script, you should have a folder on your hard drive with 2409 .html files labeled post1.html , post2....

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Scraping R-Bloggers with Python

January 4, 2012
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In this post I promised to show how I use Python with the BeautifulSoup and Mechanize modules to scrape information from different websites. As a fun exercise, and something that should interest the readers of R-bloggers, I thought it would be interest...

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R-Function GScholarScraper to Webscrape Google Scholar Search Result

November 9, 2011
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R-Function GScholarScraper to Webscrape Google Scholar Search Result

Based on my previous post on Web Scraping I coded and uploaded the Function "GScholarScraper" HERE for testing!The function will pull all (!) results, processing pages in chunks of 100 results/titles, and return a file with all titles, links, etc. It w...

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Interacting with bioinformatics webservers using R

September 8, 2011
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Interacting with bioinformatics webservers using R

In an ideal world, all bioinformatics tools would be made available via the Web as a web service with an API, as well as a standalone package to download for local use. This is rarely the case and sometimes, even where one or the other is available, factors such as cost come into play. So

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