Usage of accelerated BLAS libraries seems to shrouded in some mystery, judging from somewhat regularly recurring requests for help on lists such as r-sig-hpc (gmane version), the R list dedicated to High-Performance Computing. Yet it doesn't have to be...
al Galili requested in the R-help mailing list for a SyntaxHighlighter brush for the R language, so that WordPress users can highlight their R code easily. I promised to contribute a few minutes on this task, and here is the result: /** * Author: Yihui Xie * URL: http://yihui.name/en/2010/09/syntaxhighlighter-brush-for-the-r-language * License: GPL-2 | GPL-3 */
I came to R from SQL. I’ve heard that packages such as reshape and plyr are quite beautiful, but to me they are somewhat non-intuitive. I’m always looking for SELECT mean(sodium) as mean, variance(sodium) as var FROM texas GROUP BY … Continue reading →
Hadley Wickham has just released updates to his data-manipulation packages for R, plyr and reshape (now called reshape2), that are much faster and more memory-efficient than the previous incarnations. The reshape2 package lets you flexibly restructure and aggregate data using just three functions (melt, acast and dcast), whereas the plyr package is kind of like a supercharged SQL "GROUP...
So if you had a robot that was an expert at botany - would you have a bot botanist? Among other things, it would need to to distinguish flowers through vision and image processing, and be able to classify various kinds of plants based upon specif...
So if you had a robot that was an expert at botany - would you have a bot botanist? Among other things, it would need to to distinguish flowers through vision and image processing, and be able to classify various kinds of plants based upon specif...
I was reading an old post that describes GEOmetadb, a downloadable database containing metadata from the GEO database. We had a brief discussion in the comments about the growth in GSE records (user-submitted) versus GDS records (curated datasets) over time. Below, some quick and dirty R code to examine the issue, using the Bioconductor GEOmetadb 
I’ve just gone through a bit of a ‘journey of discovery’ in R while trying to plot a grid of plots for one of the research projects I’m doing. I wanted to write a simple function which could produce this grid of plots from a CSV file, allowing me to easily view the trends of
The FDIC regularly publishes a Failed Bank List and related statistics. This post uses data in the original XLS from the FDIC web site which is formatted for human consumption to produce the charts below using R. Note that 2010 data be...
...a continuing journey through Using R for Introductory Statistics, by John Verzani. Simple linear regression Linear regression is a kooky term for fitting a line to some data. This odd bit of terminology can be blamed on Sir Francis Galton, a proli...
Zero Inflated Models and Generalized Linear Mixed Models with R.
Zuur, Saveliev, Ieno (2012).
