1214 search results for "Excel"

GLMM Hell

July 7, 2011
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GLMM Hell

I have been starting to analyze some data I have of repeated counts of salamanders from 5 plots over 4 years. I am trying to develop a predictive model of salamander nighttime surface activity as a function of weather variables. The repeated counting l...

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Things I would tell a budding bioinformatician to learn.

July 7, 2011
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I recently read Ewan Birney's blog post, which I found echoed a lot of my own thoughts about the use of statistical in computational biology. I thought I would compile my own similar list but for bioinformatics  / computational biology in general. I have not been and in the field as long as Ewan and I certainly still...

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Use R!

July 7, 2011
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Use R!

In short: R is a free intuitive programming language that is used by practitioners in a plethora of academic disciplines. Therefore, it is on the cutting edge, and expanding rapidly. It creates stunning visuals, works seamlessly together with LaTeX, has really good online documentation and the community is unparalleled. A week...

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Color reduction of an image – and Warholize?

July 5, 2011
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Color reduction of an image – and Warholize?

There seems to be several methods out there for reducing the colors in an image. I became interested in this after pondering how this is done in the excellent freeware program IrfanView. Unfortunately, their method is not described anywhere that I coul...

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ARMA Models for Trading, Part VI

July 5, 2011
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ARMA Models for Trading, Part VI

All posts in this series were combined into a single, extended tutorial and posted on my new blog. In the fourth posting in this series, we saw the performance comparison between the ARMA strategy and buy-and-hold over the last approximately 10 years. Over the last few weeks (it does take time, believe me) I back-tested

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Even faster linear model fits with R using RcppEigen

Linear regression models are a major component of every applied researcher's toolbox. Obtaining results more quickly is therefore of central importance, particularly when many such models have to be fit. Common examples in this context are Monte Carl...

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The R apply function – a tutorial with examples

July 2, 2011
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Today I had one of those special moments that is uniquely associated with R. One of my colleagues was trying to solve what I term an 'Excel problem'. That is, one where the problem magically disappears once a programming language is employed. Put simpl...

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Mapping SNPs to Genes for GWAS Enrichment Analysis

June 30, 2011
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Mapping SNPs to Genes for GWAS Enrichment Analysis

There are several tools available for conducting a post-hoc analysis of GWAS data looking for enrichment of significant SNPs using literature or pathway based resources. Examples include GRAIL, ALLIGATOR, and WebGestalt among others (see SNPath R Pac...

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Two browsers for R help documentation

June 29, 2011
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Two browsers for R help documentation

The same excellent documentation for R commands is available through two different help browsers: text and HTML, and let’s see how how each looks, works, and how to switch the default. Look and feel Here is how both look for … Continue reading →

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Saving Chunks of SSURGO Data in SoilWeb for Google Earth

June 28, 2011
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Saving Chunks of SSURGO Data in SoilWeb for Google Earth

SoilWeb is an interactive, multifaceted interface to USDA-NCSS soil survey information. Our SoilWeb application for Google Earth streams soil map units and point data as you navigate across the lower '48 states. Currently, our system imposes a 30,000 ...

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