(This article was first published on PsychoAnalytix Blog, and kindly contributed to R-bloggers)
I have been working on a reliable optimization method for this crazy function.
f.egg<-function(x,y){
(2+cos(x)+cos(y))/(100+x^2+y^2)
}

I noticed that if I had a large variance in the random normal generator, the optimizer would jump all over the place but would not settle down in the best optimum. So I added in a second step that takes the best of the attempted values and uses them as a second set of start values. Then, a second smaller variance is used that does not allow for major jumps. The two step anneal function can be seen below.
twostep.anneal<-function(f,mu,n=1000,sig=c(1,.1),t=1,g=0.999){
xm = mu[1]
ym = mu[2]
fm = f(xm,ym)
x = rep(NA,n*2)
y = rep(NA,n*2)
fx = rep(NA,n*2)
for(k in 1:2){
s=sig[k]
if(k==2){
xm=best[1]
ym=best[2]
}
for (i in 1:n){
dxm = xm+rnorm(1,0,s)
dym = ym+rnorm(1,0,s)
fdm = f(dxm, dym)
t = t*g
if (runif(1) < (fdm/fm)^(1/t)){
xm = dxm
ym = dym
fm = fdm
}
x[(i+(k-1)*n)] = xm
y[(i+(k-1)*n)] = ym
fx[(i+(k-1)*n)] = fm
}
ii = which(fx==max(fx, na.rm=TRUE))[1]
best=c(x[ii], y[ii])
}
list(x = x, y = y, fx = fx, best = best , fbest = fx[ii], t=t)
}
To run the function and see the path of the anneal function use this code.
x<-seq(-30,30,.5) y<-seq(-30,30,.5) z<-outer(x,y, f.egg) aa<-twostep.anneal(f.egg, n=1000, sig=c(2, 2), mu=c(5,5), t=2, g=.99) contour(x,y,z) lines(aa$x, aa$y, col=2)
To leave a comment for the author, please follow the link and comment on his blog: PsychoAnalytix Blog.
R-bloggers.com offers daily e-mail updates about R news and tutorials on topics such as: visualization (ggplot2, Boxplots, maps, animation), programming (RStudio, Sweave, LaTeX, SQL, Eclipse, git, hadoop, Web Scraping) statistics (regression, PCA, time series,ecdf, trading) and more...

Zero Inflated Models and Generalized Linear Mixed Models with R.
Zuur, Saveliev, Ieno (2012).