You may find it still at its home, http://www.vlaaivis.com/.
As I moved on to different things, I still remembered this as a good way of visualising multifactorial data, especially when comparing several candidates (compounds, in my case). Inspired by a post on LearnR, I decided to start reimplementing something similar in R for use within our own group.
The most significant change from the LearnR post is that I added in a 'facets_grid()' call to the ggplot, so as to split the polar bar chart in the different compounds. Thanks to the faceting, all compounds are plotted on the same 'space' and are therefore immediately comparable.
The other, minor, change I made was to create the dataframe as a matrix, which is the way we usually store such kind of data, and use 'melt', from the package 'reshape', to convert it into a form suitable for plotting as bar chart (polar or not). I left in the comments an option for reading in the data from a text file...
Here's the dummy template I came up with:
And here's my output:
druglikeness score, then the fuller the pie, the better looking the compound would be for a medicinal chemist.
I omitted the legend, since the variable names (a-e) is present in each plot (
Two major things left to do:
- I would like to plot the compound in order of 'fullness' - a sort/order snippet is there in the code, and the new ordering survives the melting of the matrix - however, ggplot seems to rearrange the data according to some internal order... (Thanks to Christoph for fixing this)
- Right now, the code isn't suitable for too many compounds, since the facets_grid() will arrange them horizontally. I would be grateful if someone were to let me know how to automatically arrange them in a grid of a given maximum number of columns... I know how to do that when I explicitly create each plot, but then I loose the ease of comparison which comes from all compounds being plotted on the same scale... ( Thanks to Christoph for fixing this too)
I'll update this text and the code as I improve the visualization.
If you don't feel like messing around with code, you can always try and build a similar plot using deduceR:
Hope one or more of you find this useful!