Blog Archives

Day #54 Major bugfix

It seems that Rserve works in a 1 byte charactersystem. This was giving us strange results. When I read in data from KNIME with strange characters like µ the errors began. Every time I used the character “µ”, my output in Rserve would be:...

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Day #38-39 Data-manipulation Part 1

Last week i created some plots, always for 1 feature. Today I started working on the full script that creates all these plots, 1 per feature. This means, using for loops in R. Let’s see how this is going to work out. Today I mostly worked on data...

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Day #38-39 Data-manipulation

Last week i created some plots, always for 1 feature. Today I started working on the full script that creates all these plots, 1 per feature. This means, using for loops in R. Let’s see how this is going to work out. Today I mostly worked on data...

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Day #34 Detailing graphs

Today mostly existed in adding details or changing certain aspects of my graphs. For example, I had to turn around the y-axis on my levelplot, circleplot, … which wasn’t so easy at first. But after a bit of googling I found out I had to rev...

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Day #35 replacing characters

Today I had a meeting with Emmanuel. He is a guy from inside Janssen who is very good with R-scripts. He made a lot of great plots which I had to use for our reports. During the meeting we came to a conclusion that all the difficult R-scripting he did,...

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Day #32-33 reporting, R and Birt

I’m starting on my real R-Scripts now. We got an assesment for some Reports and they needed my graphs and Veerle’s Reports. So the tasks are: Well distribution plot Quality plate control Surface Plot Heatmap CirclePlot and more to come&#823...

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Day #30-31 errorbars here, errorbars there

April 28, 2011
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Today I have been playing with the errorbars from knime. To recreate the plot from http://flyordie.sin.khk.be/2011/04/20/day-27-a-lot-of-graphics-in-one-place/ I had to be able to create 2 y-axis, and multiple plots on 1 graph. At the end of the day I ...

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Day #28 ggplot2 in knime

April 27, 2011
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If you haven’t read yesterday’s post, I advise you to do so, because this is the fix of yesterday. Day #27: A lot of graphics in one place I found out how to use ggplot2 in knime. Say, for example, your code is this: library(ggplot2) myplot...

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Day #27 A lot of graphics in one place

April 20, 2011
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assignment in R Today my internship-promotor gave me the assignment to create this chart in R. This means: I get a lot of data and put a certain column on a barchart for each plate. On top of that data, you place 2 errorbars. At first I thought, piece ...

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Day #25-26 R is soo static!

April 19, 2011
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Today I stumbled upon a very nice package called “rgl”. For documentation and demos, take a look at it’s website. Rgl is: quoted by rgl site itself: The rgl package is a visualization device system for R, using OpenGL as the rendering...

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