Blog Archives

Yet Another One.. Animation with saveHTML / saveVideo from Package ANIMATION

October 12, 2011
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Yet Another One.. Animation with saveHTML / saveVideo from Package ANIMATION

...some more playing with saveHTML, as.raster() and rasterImage(), producing a "flickering screen":Read more »

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Plot Animation with Imported Images

October 10, 2011
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Plot Animation with Imported Images

...I really dig the animation package! ..so here's the outcome of my firsts encounters with saveHTML() - I produced an animation with pre-existing images by utilizing the functions readJPEG() and rasterImage() from the R-packages jpeg and ReadImage...

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Nice Species Distribution Maps with GBIF-Data in R

September 23, 2011
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Nice Species Distribution Maps with GBIF-Data in R

Here's an example of how to easily produce real nice distribution maps from GBIF-data in R with package maps... Read more »

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Use of Classification Trees to Investigate Traits of Invasive Species

September 20, 2011
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Use of Classification Trees to Investigate Traits of Invasive Species

Which traits make an alien species invasive?Due to what traits an alien species becomes established in a foreign flora?This kind of questions could be analysed by the use of recursive partitioning and classification trees..(the below example also inclu...

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Comparing Two Distributions

August 29, 2011
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Comparing Two Distributions

Here I compare two distributions, flowering duration of indigenous and allochtonous plant species. The hypothesis is that alien compared to indigenous plant species exhibit longer flowering periods.Read more »

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Test Difference between Two Proportions & Plot Confidence Intervals

August 11, 2011
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Test Difference between Two Proportions & Plot Confidence Intervals

..an illustrative example for testing proportions and presenting the results.the data: number of indigenous and alien plant species with and without vegetative reproduction. Hypothesis: The proportion of species with vegetative reproduction is differen...

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Two-Way PERMANOVA (with Vegan-Function adonis) Using Customized Contrasts

August 8, 2011
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Two-Way PERMANOVA  (with Vegan-Function adonis) Using Customized Contrasts

...say you have a multivariate dataset and a two-way factorial design - you do a PERMANOVA and the aov-table (adonis is using ANOVA or "sum"-contrasts) tells you there is an interaction - how to proceed when you want to go deeper into the ana...

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Lattice-xyplot without Border/Box, with Axes at Bottom & Left Side Only, with Custom Ablines/Grid & Axis-Labelling

August 4, 2011
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Lattice-xyplot without Border/Box, with Axes at Bottom & Left Side Only, with Custom Ablines/Grid & Axis-Labelling

Here's how you do a lattice-xyplot without border/box, with axes at bottom & left side only, with custom ablines/grid & axis-labelling Read more »

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Multiple Comparisons for GLMMs using glmer() & glht()

June 14, 2011
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Multiple Comparisons for GLMMs using glmer() & glht()

...that's an example of how to apply multiple comparisons to a generalised linear mixed model using the function glmer from package lme4 & glht() from package multcomp. By the way you see a nice example for visualizing data from a nested sampli...

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Drawing Grids in R

June 1, 2011
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Drawing Grids in R

Here's an example of how to draw a grid in R and how to fill it.I did use the grid-package and its functions for displaying species cover values at squares of a recording frame...Read more »

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