In a recent talk to the DC R User Group, Anthony Damico presented the following handy flowchart for learning to do survey analysis with R (actually, it's a pretty good flowchart for learning R for any application): Since they're not clickable above, here are the resource links: Learn R by watching two‐minute videos on http://twotorials.com Read the “Getting Started...

Zero Inflated Models and Generalized Linear Mixed Models with R.
Zuur, Saveliev, Ieno (2012).