Blog Archives

Bio7 2.0 for Linux Released!

January 31, 2015
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Bio7 2.0 for Linux Released!

01.02.2015 I released the Linux version of Bio7 2.0 (see screenshot below). For an overview of the new Bio7 features follow the link: Bio7 2.0 new features Added Linux features: A new Java menu action (in the Scripts menu) is available to start a Py4J server which can communicate to Java and CPython (if enabled

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Image Data Transfer to R with ImageJ and Bio7 2.0

December 9, 2014
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09.12.2014 In the new version of Bio7 2.0 i added some new easy to use functions to transfer image data from ImageJ to R. For example, you can now drag a folder of images on the ImageJ-Canvas view, open them memory efficient as a virtual stack in ImageJ and transfer them with one action as

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Bio7 2.0 for Windows Released!

December 1, 2014
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Bio7 2.0 for Windows Released!

01.12.2014 A new Windows version of Bio7 is available. Many new features have been added to Bio7 2.0 which is now based on Eclipse 4.4. Highlights are the improved R editor, the R debugging Graphical User Interface (using the standard R debugger), the integrated Java Development Tools (JDT) to create Java simulation models with a

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R Debugging GUI Improvements for Bio7

November 20, 2014
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20.11.2014 In my last post i presented the first version of a debugging GUI for R in Bio7 which is just a visual wrapper for the default R debugging functions. In the meantime i added some new methods and also improved the visualization. For the upcoming Bio7 release i have to make some cleanups but

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Simple R Debugging GUI for Bio7

September 26, 2014
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26.09.2014 For the next release of Bio7 I implemented a first simple debugging GUI (Graphical User Interface) for R scripts. For the debugging process a change from Rserve to an available Java R console connection in Bio7 is necessary (with Rserve alone a debugging interface wouldn’t be possible). Both connections runs in the same process

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Bio7 R Documentation and Plot Examples

July 18, 2014
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18.07.2014 A very time expensive process is the documentation of software you created yourself. I was finally able to update and improve the documentation for Bio7 and the embedded R “Graphical User Interface”. For the documentation this time i used Lyx to export the LaTeX document as HTML with the available eLyXer export module. The

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R editor improvements for Bio7

January 31, 2014
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R editor improvements for Bio7

30.01.2014 For the next release of Bio7 based on Eclipse 4.4 an improvement of the R editor for a much better editing experience of R scripts will be available. The integrated editor itself is built bottom-up (based upon an Eclipse editor editor template) although there a great editor frameworks (DLTK) or frameworks to develop programming

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Bio7 1.7.1 MacOSX Released

October 15, 2013
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Bio7 1.7.1 MacOSX Released

15.10.2013 Finally i released  Bio7 1.7.1 for MacOSX. This release is bundled with a Java Runtime Environment and the latest R version (3.0.2) for MacOSX. For the plot functionality eventually XQuartz has to be installed (if not already installed!). Please note the installation requirements at the bottom of the page. Here are some screenshots for

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Bio7 1.7.1 for Linux Released

September 24, 2013
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Bio7 1.7.1 for Linux Released

24.09.2013 I released a new Linux version of Bio7 (64-bit only – see Screenshots below). For an overview of the new features please read the release notes for Windows 1.7.0 and 1.7.1: http://bio7.org/?p=2049 http://bio7.org/?p=2112 In addition some Linux specific improvements are embedded in this release. Additional Linux features: Rserve can be opened with a Gnome

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New Bio7 1.7.1 Release with Improved R Plot Image Display

September 6, 2013
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New Bio7 1.7.1 Release with Improved R Plot Image Display

05.09.2013 I released a new Windows version of Bio7. This release improves the general R plot functionality of Bio7. The default image plots are now displayed in a Image stack if more than one plot command is executed. In this way all plots are automatically openend and not only the last image plot. Multiple plots

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