I’ve been working with Linux for some time but always in a dual boot setup. While I used Linux-Mint at home, my university computer always had Windows. Most of the times it was not a problem working in one or the other and share files between computers with Dropbox.
After getting constantly frustated with Windows updates, crashes and slow-downs, I decided to make the full switch. All my computers are now Linux based. I am very happy with my choice and regret not making the switch earlier.
Since I formatted all my three computers (home/laptop/work), I wrote a small bash file to automate the process of installing R and its dependencies. I use lots of R packages in a daily basis. For some of them, it is required to install dependencies using the terminal. Each time that a
install.package() failed, I saved the name of the required software and added it to the bash file. While my bash file will not cover all dependencies for all packages, it will suffice for a great proportion.
The steps for using it are:
1) Copy the contents of the code presented next in a file called
InstallR.sh. Do notice that the name of the release, in this case trusty, is added to the cran address. Try not running the bash file twice, or it will append the CRAN address more than one time in /etc/apt/sources.list.
#!/bin/bash # Adds R to apt and install it # # Instructions: # sudo chmod 700 InstallR.sh # ./FirstTimeInstallR.sh sudo echo "deb http://cran.rstudio.com/bin/linux/ubuntu trusty/" | sudo tee -a /etc/apt/sources.list gpg --keyserver keyserver.ubuntu.com --recv-key E298A3A825C0D65DFD57CBB651716619E084DAB9 gpg -a --export E298A3A825C0D65DFD57CBB651716619E084DAB9 | sudo apt-key add - sudo apt-get update sudo apt-get install -y r-base r-base-dev r-cran-xml r-cran-rjava libcurl4-openssl-dev sudo apt-get install -y libssl-dev libxml2-dev openjdk-7-* libgdal-dev libproj-dev libgsl-dev sudo apt-get install -y xml2 default-jre default-jdk mesa-common-dev libglu1-mesa-dev freeglut3-dev sudo apt-get install -y mesa-common-dev libx11-dev r-cran-rgl r-cran-rglpk r-cran-rsymphony r-cran-plyr sudo apt-get install -y r-cran-reshape r-cran-reshape2 r-cran-rmysql sudo R CMD javareconf
2) Change the permissions of the file so that it can be executed:
sudo chmod 700 InstallR.sh
3) Execute it as
That’s it. I hope others will find this simple bash script useful as well.