Posts Tagged ‘ treebase ’

Weecology can has new mammal dataset

December 29, 2011
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Weecology can has new mammal dataset

So the Weecology folks have published a large dataset on mammal communities in a data paper in Ecology.  I know nothing about mammal communities, but that doesn't mean one can't play with the data...Their dataset consists of five csv files: &...

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treebase package on cran

October 25, 2011
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treebase package on cran

My treebase package is now up on the CRAN repository. (Source code is up, the binaries should appear soon). Here’s a few introductory examples to illustrate some of the functionality of the package. Thanks in part to new data deposition requirements at journals such as Evolution, Am Nat, and Sys Bio, and data management plan

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TreeBASE in R: a first tutorial

May 16, 2011
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TreeBASE in R: a first tutorial

My TreeBASE R package is essentially functional now.  Here’s a quick tutorial on the kinds of things it can do.  Grab the treebase package here, install and load the library into R. TreeBASE provides two APIs to query the database, one which searches by the metadata associated with different publications (called OAI-PMH), and another which

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