(This article was first published on Super Nerdy Cool » R, and kindly contributed to R-bloggers)
Had to share this link today as I better read all the content it refers to and incorporate a lot of the recommended practices into my work flow. Thanks Tal Galili for compiling all those information.
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Zero Inflated Models and Generalized Linear Mixed Models with R.
Zuur, Saveliev, Ieno (2012).