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Treespace visualization of a heuristic best tree search in #R package #ggtree #phylogenetics pic.twitter.com/hnSJpIABql
— Alex Damián (@antropoteuthis) January 29, 2016
@guangchuangyu Updated to latest #ggtree and #ggplot2 and very impressed! Any ideas on using geom_label with tip labels to add box/fill?
— Jo Williams-Newkirk (@ajwnewkirk) January 25, 2016
ggtree looks really good! #rstatshttps://t.co/7rtexYV3I5
— Paul Staab (@paulstaab) January 15, 2016
If you’re not using ggtree by @guangchuangyu for your trees in R then you should be! #rstats #bioinformaticshttps://t.co/Z8HdLeyiIg
— Matt Workentine (@mworkentine) January 5, 2016
@guangchuangyu #ggtree has actually changed my life! it is #awesome! #RePlottingEveryTreeFigureEver #ggplot2
— Peter Cowman (@pete_cowman) November 13, 2015
I continue to be amazed by the speed and quality of support @guangchuangyu provides for #ggtree #rstats
— Jo Williams-Newkirk (@ajwnewkirk) November 10, 2015
@tylerrinker really appreciate all of @guangchuangyu efforts with #ggtree; extends well beyond its original intent; love it
— klr (@timelyportfolio) September 3, 2015
@guangchuangyu I even used #ggtree!
— Simon Frost (@sdwfrost) December 1, 2015
@minisciencegirl Yep we use it mainly for that… there's a more featured version in https://t.co/5oOeLwx2Hg but I need to switch to ggtree!
— Kat Holt (@DrKatHolt) November 19, 2015
Sent my first #rstats #shiny app off to be alpha tested by a colleague today. Wouldn't be possible without #ggtree.
— Jo Williams-Newkirk (@ajwnewkirk) October 31, 2015
@genetics_blog Thanks. We have turned this into a shiny app too, but need to iron out some bugs… Also, try the new ggtree library!
— Kat Holt (@DrKatHolt) September 8, 2015
@guangchuangyu My bad 🙁 It's working perfectly fine. Thanks so much for an awesome #rstats #ggplot2 package ggtree! pic.twitter.com/ofmzyOWe9C
— Ahmed Moustafa (@AhmedMoustafa) January 26, 2015
@guangchuangyu A bit improved version 🙂 pic.twitter.com/TZTSBK5aSm
— Ahmed Moustafa (@AhmedMoustafa) January 26, 2015
I wish this guy was my student! @guangchuangyu Sure, it won't get a Nature or Science paper, but who cares? http://t.co/XnA7uaFVms
— Simon Frost (@sdwfrost) January 31, 2015
@CieraReports ggtree is a cool package that is based on the drawing of ggplot2 https://t.co/gFPHSdGAj1
— ホクソうり (@u_ribo) January 26, 2015
#ggtree https://t.co/VFrKCcz0DI is a pretty powerful #rstats #ggplot2 @Bioconductor pkg for neat #phylogenetic #dataviz by @guangchuangyu
— Ahmed Moustafa (@AhmedMoustafa) January 30, 2015
ggtree extends ggplot2 for phylogenetic trees. tons of documentation+examples: https://t.co/y9V52s2yWd #Rstats pic.twitter.com/Z9SDcueR2c
— Stephen Turner (@genetics_blog) November 10, 2015
Need to visualize some trees? Recent #R package #ggtree looks quite interesting. https://t.co/EPaXIqmvDZ
— Sebastian Schmidt (@TSBSchm) November 11, 2015
@flashton2003 world of possibilities now! Also looking at ggtree (ggplot2 expansion) for future stuff – that looks really cool too
— David W. Cleary (@Bacterioskeptic) November 20, 2015
time for you to learn #rstats @LAevolving <- @StephSpiel new #Rstats package ggtree @ggplot2 https://t.co/DFmKGyTVwE pic.twitter.com/WRBZHlRsIa
— Salamanda (@ajzellmer) November 10, 2015
V. cool new #Rstats package ggtree, addon 2 @ggplot2, for automating tree drawing/annotating https://t.co/k3eSdVKp9C pic.twitter.com/nH8SKSaXaN
— Stephanie Spielman (@StephSpiel) November 9, 2015
Can’t wait to try. MT @genetics_blog: ggtree extends ggplot2 for phylogenetic trees: https://t.co/JuThXlHUjz #Rstats pic.twitter.com/OmAzGghvqB
— Kent Holsinger (@keholsinger) November 19, 2015
@guangchuangyu Excited to discover #ggtree; fills a lot of holes in my workflow but not seeing how to add bootstrap from ape?
— Jo Williams-Newkirk (@ajwnewkirk) September 6, 2015
ggtree added cool features, My favorite is the one from BEAST output https://t.co/3WOLxfTzRp
— Manvendra Singh (@manvendr7) November 11, 2015
ggtree looks useful: nice viz and annotations of phylogenetic trees with ggplot #rstats http://t.co/lbNKw3qIDI thanks @guangchuangyu
— Julia Gustavsen (@JuliaGustavsen) August 9, 2015
ggtree – looks like a very useful phylogenetic tree plotting package for R based on ggplot2 (https://t.co/UCXVVmG5W7)
— Simon J Greenhill (@SimonJGreenhill) December 23, 2014
Plot trees & annotation (incl BEAST, time axis) with ggtree for R! http://t.co/9ahqKQLTaI Well spotted @mackas21 pic.twitter.com/2ldvAiH2fj
— Kat Holt (@DrKatHolt) June 15, 2015
geom_label can be used to add label and also additional information coded in background color. #ggplot #ggtree pic.twitter.com/pGvrsmsOc1
— Guangchuang Yu (@guangchuangyu) September 11, 2015
view 100 boostrap trees in 2 lines. pic.twitter.com/FKNyP5dZsb
— Guangchuang Yu (@guangchuangyu) September 1, 2015
multiple sequence alignment with #phylogenetic tree via #rstats pkg #ggtree. pic.twitter.com/6CY57dLdeb
— Guangchuang Yu (@guangchuangyu) May 22, 2015
Citation
G Yu, DK Smith, H Zhu, Y Guan, TTY Lam*. ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data. Methods in Ecology and Evolution. doi:10.1111/2041-210X.12628.
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