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Interactive plotting with rbokeh

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Hello everyone! In this post, I will show you how you can use rbokeh to build interactive graphs and maps in R.

What is bokeh?

Bokeh is a popular python library used for building interactive plots and maps, and now it is also available in R, thanks to Ryan Hafen. It is a very powerful for creating good looking plots for the web easily, and it is fully compatible with shiny. Generally, plotting in bokeh is done by adding layers to a plot, similar to ggplot2. For creating a simple plot, there are two main steps involved: Okay, let’s start building some visualizations! Installation instructions are available here. In one of previous posts, I showed how you can do Hiearchical Clustering in R, and demonstrated it with the iris dataset. Let’s recreate the visualization using rbokeh:
clusters <- hclust(dist(iris[, 3:4]), method = 'average')
clusterCut <- cutree(clusters, 3)
p <- figure(title = 'Hierarchical Clustering of Iris Data') %>% 
  ly_points(Petal.Length, Petal.Width, data = iris, color = Species, hover = c(Sepal.Length, Sepal.Width)) %>%
  ly_points(iris$Petal.Length, iris$Petal.Width, glyph = clusterCut, size = 13)
p
which gives us the following plot: All the points where the two colors don’t match are the ones that were clustered in correctly. Now, let’s build a chart to show apple stock data for the past year. The data was obtained from Yahoo Finance.
aapl <- read.csv('aapl.csv')
aapl$Date <- as.Date(aapl$Date)
p <- figure(title = 'Apple Stock Data') %>% 
  ly_points(Date, Volume / (10 ^ 6), data = aapl, hover = c(Date, High, Open, Close)) %>%
  ly_abline(v = with(aapl, Date[which.max(Volume)])) %>%
  y_axis(label = 'Volume in millions', number_formatter = 'numeral', format = '0.00')
which gives us the following plot (with a vertical line on the date with the highest amount of volume): In another previous post, I demonstrated how you can use Leaflet to build Interactive Maps. Let’s recreate this using rbokeh:
SFData <- read.csv('SFPD_Incidents_-_Previous_Year__2015_.csv')
data <- subset(SFData, Category == 'BRIBERY' | Category == 'SUICIDE')
p <- gmap(lat = 37.78, lng = -122.42, zoom = 13) %>%
  ly_points(Y, X, data = data, hover = c(Category, PdDistrict), col = 'red') %>%
  x_axis(visible = FALSE) %>%
  y_axis(visible = FALSE)
which gives us the following plot: We can also somewhat replicate the facet_grid feature from ggplot2 as follows. We will use the diamonds dataset from ggplot2.
diamonds <- ggplot2:: diamonds
l <- levels(diamonds$color)
plot_list <- vector(mode = 'list', 7)

for (i in 1:length(l)) {
  data <- subset(diamonds, color == l[i])
  plot_list[[i]] <- figure(width = 350, height = 350) %>%
    ly_points(carat, price, data = data, legend = l[i], hover = c(cut, clarity))
}

grid_plot(plot_list, nrow = 2)
which gives us this plot: Pretty cool, don’t you think? If you want to learn more: The official documentation. The author explains in detail about more customization options, and also shows you how you can build even cooler visualizations, including a visualization of the periodic table, and a visualization of baseball data to show the density of fielding locations of all doubles. That brings us to the end of the article! As always, if you have questions/feedback, feel free to comment below or reach out to me on Twitter.

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