writing #rstats bindings for bwa-mem, my notebook.

July 30, 2014

(This article was first published on YOKOFAKUN, and kindly contributed to R-bloggers)

I wanted to learn how to bind a C library to R, so I’ve created the following bindings for BWA. My code is available on github at :https://github.com/lindenb/rbwaMost of the C code was inspired from Heng Li’s code https://github.com/lh3/bwa/blob/master/example.c.
A short description of the C codeIn https://github.com/lindenb/rbwa/blob/master/rbwa.c:
struct RBwaHandler
This structure holds a

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