viewing and annotating phylogenetic tree with ggtree

December 21, 2014
By

(This article was first published on YGC R, and kindly contributed to R-bloggers)

When I need to annotate nucleotide substitutions in the phylogenetic tree, I found that all the software are designed to display the tree but not annotating it. Some of them may support annotating the tree with specific data such as bootstrap values, but they are restricted to a few supported data types. It is hard/impossible to inject user specific data.

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