Posts Tagged ‘ visualization ’

Visualizing Data with R and ggplot2 (video w/ slides)

December 18, 2009
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On December 3, 2009 I presented a brief talk at the NYC R meetup on how to create data visualizations with R using the immensely powerful ggplot2 package. The talk is very light on motivation but heavy on examples, so it may be more useful to those with some R and/or ggplot2 experience.

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Browse R Graphics with the R Graph Gallery and the R Graphical Manual

December 15, 2009
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One of R's biggest strengths is its unparalleled graphing capabilities.  Just see any of our previous posts on ggplot2, visualization, or other posts tagged with R. R has several fundamentally different systems for plotting, including base graphics, lattice, and ggplot2.  Furthermore, many add-on packages come with their own functions for producing problem-domain specific graphics. For example,

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My Five Rules for Data Visualization

December 3, 2009
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My Five Rules for Data Visualization

Tonight the NYC R Meetup will be discussing data visualization in R using ggplot2. As part of tonight’s meeting I will be providing a very brief show and tell, which includes mostly code examples and external resources. This exercise has had me thinking quite a bit about data visualization. In addition, a

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QQ plots of p-values in R using ggplot2

November 9, 2009
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Way back will wrote on this topic.  See his previous post for Stata code for doing this.  Unfortunately the R package that was used to create QQ-plots here has been removed from CRAN, so I wrote my own using ggplot2 and some code I received from Daniel Shriner at NHGRI. Of course you can use R's built-in qqplot() function, but...

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“I’m a Republican because…”, visualized with R

October 15, 2009
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“I’m a Republican because…”, visualized with R

Visualizing user-generated statements from GOP.com to the theme of "I'm a Republican because...", using R.

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Visualizing sample relatedness in a GWAS using PLINK and R

October 9, 2009
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Strict quality control procedures are extremely important for any genome-wide association study.  One of the first steps you should take when running QC on your GWAS is to look for related samples in your dataset.  This does two things for you.  First, you can get an idea of how many related samples you have in your dataset, and second,...

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Comparison of plots using Stata, R base, R lattice, and R ggplot2, Part I: Histograms

September 21, 2009
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One of the nicer things about many statistics packages is the extremely granular control you get over your graphical output.  But I lack the patience to set dozens of command line flags in R, and I'd rather not power the computer by pumping the mouse trying to set all the clicky-box options in Stata's graphics editor.  I want something...

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Locate the position of CRAN mirror sites on a map using Google Maps

August 5, 2009
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Locate the position of CRAN mirror sites on a map using Google Maps

Inspired by this post (suggested here by the always useful Revolutions blog), I attempted to plot the position of CRAN mirrors on a map taking advantage of the nice R package RgoogleMaps (check the dependencies!). Below the code: library(XML) # downlo...

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Simple visualization of a 11X5 table (for WordPress 2.9 Features Vote Results)

July 31, 2009
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Simple visualization of a 11X5 table (for WordPress 2.9 Features Vote Results)

I guess this is not the number one post I would like to start with on this blog, but I feel the time is right for it (community-wise). I’ll move on to the subject matter in a moment, but first a short intro: This blog is written by Tal Galili. I am ...

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ggplot2: more wicked-cool plots in R

July 20, 2009
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As far as I know there are 3 different systems for producing figures in R: (1) base graphics, included with R, (2) the lattice package, and (3) ggplot2, one of the newer plotting systems which is, according to the creator Hadley Wickham, "based on the grammar of graphics, which tries to take the good parts of base and lattice...

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