628 search results for "knitr"

The Olympic Medal Table Visualized Gapminder Style

August 20, 2016
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The Olympic Medal Table Visualized Gapminder Style

This work is licensed under a Creative Commons Attribution-ShareAlike 4.0 International License. The markdown+Rknitr source code of this blog is available under a GNU General Public License (GPL v3) license from . Abstract Following Hans Rosling's Gapminder animation style we visualize the total number of medals a country...

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A website and blog for R users

August 18, 2016
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In this post, I will show you how to quickly create your website, blog and first posts. This is designed for R users only. Philosophy This had to be free. This had to be easy. This had to only need RStudio and GitHub. Every content had to be preview...

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Introduction to LabKey and R Integration

August 12, 2016
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Introduction to LabKey and R Integration

How and What to deliver are two main themes of my journey to look for an effective way of developing data products. For the former, decent web technologies encompassing HTML, CSS and Javascript are important. Read More ...

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Annotating sets of genomic intervals with genomic annotations such as chromHMM

August 12, 2016
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Annotating sets of genomic intervals with genomic annotations such as chromHMM

Annotating sets of genomic intervals with genomic annotations such as chromHMM Genomation is an R package to summarize, annotate and visualize genomic intervals. It contains a collection of tools for visualizing and analyzing genome-wide data sets, i.e....

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No Sleep During the Reproducibility Session

August 3, 2016
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No Sleep During the Reproducibility Session

This work is licensed under a Creative Commons Attribution-ShareAlike 4.0 International License. The markdown+Rknitr source code of this blog is available under a GNU General Public License (GPL v3) license from . Abstract R code is provided for implementing a statistical method by Nishiura, Miyamatsu, and Mizumoto...

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Finding possible class schedules

August 1, 2016
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Finding possible class schedules

Over the weekend my brother wanted to figure out his class schedule for the next semester. He is a veterinary medicine and zootechnology student at UNAM. For this upcoming semester there is a set of classes he has to take and each has 8 or so instructo...

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Tips on Creating Presentations with RStudio and Webpage Embedding

August 1, 2016
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Tips on Creating Presentations with RStudio and Webpage Embedding

RStudio provides functionality to make presentations in R in a way very similar to knitr reports. Presentations produced in RStudio are dependent on the on reveal.js HTML presentation framework, and like knitr reports, these presentations are nice way of embedding both code chucks and have the results shown that are dynamically generated when the presentation is...

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A link that can tell more than dozens of lines of R code – what’s new in archivist?

July 28, 2016
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A link that can tell more than dozens of lines of R code – what’s new in archivist?

Can you spot the difference between this plot: And this one: You are right! The latter has an embedded piece of R code. What for? It’s a call to a function aread from archivist – a package that manages external copies of R objects. This piece of code was added by the function addHooksToPrint(), that … Czytaj...

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The reproducibility crisis in science and prospects for R

July 26, 2016
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Guest post by Gregorio Santori (<[email protected]>) The results that emerged from a recent Nature‘s survey confirm as, for many researchers, we are living in a weak reproducibility age (Baker M. Is there a reproducibility crisis? Nature 2016;533:453-454). Although the definition of reproducibility can vary widely between disciplines, in this survey was adopted the version for … Continue...

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Casting Call for MERS-CoV in Korea, 2015

July 18, 2016
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Casting Call for MERS-CoV in Korea, 2015

This work is licensed under a Creative Commons Attribution-ShareAlike 4.0 International License. The markdown+Rknitr source code of this blog is available under a GNU General Public License (GPL v3) license from . Abstract We perform an adjustment for observed-but-not-yet-reported cases (aka. nowcasting) for the epidemic curve of the...

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