Barr et al's well-intentioned paper is starting to lead to some seriously weird behavior in psycholinguistics! As a reviewer, I'm seeing submissions where people take the following approach:1. Try to fit a "maximal" linear mixed model. If you get...

Barr et al's well-intentioned paper is starting to lead to some seriously weird behavior in psycholinguistics! As a reviewer, I'm seeing submissions where people take the following approach:1. Try to fit a "maximal" linear mixed model. If you get...

Linear models are a very simple statistical techniques and is often (if not always) a useful start for more complex analysis. It is however not so straightforward to understand what the regression coefficient means even in the most simple case when there are no interactions in the model. If we are not only fishing for

by Joseph Rickert The igraph package has become a fundamental tool for the study of graphs and their properties, the manipulation and visualization of graphs and the statistical analysis of networks. To get an idea of just how firmly igraph has become embedded into the R package ecosystem consider that currently igraph lists 72 reverse depends, 59 reverse imports...

It has been a long time coming. Vegan now has in-built, native ability to use restricted permutation designs when testing effects in constrained ordinations and in range of other methods. This new-found functionality comes courtesy of Jari (mainly) and my efforts to have vegan permutation routines use the permute package. Jari also cooked up a standard interface...

by Terry M. Therneau Ph.D. Faculty, Mayo Clinic About a year ago there was a query about how to do "type 3" tests for a Cox model on the R help list, which someone wanted because SAS does it. The SAS addition looked suspicious to me, but as the author of the survival package I thought I should understand...

I recently attended a week-long R course in Newcastle, taught by Colin Gillespie. It went from “An Introduction to R” to “Advanced Graphics” via a day each on modelling, efficiency and programming. Suffice to say it was an intense 5 days! Overall it was the best R course I’ve been on so far. I’d recommend it to others,...

In my previous post I wrote about the importance of age and why it is a good idea to try avoiding modeling it as a linear variable. In this post I will go through multiple options for (1) modeling non-linear effects in a linear regression setting, (2) benchmark the methods on a real dataset, and (3) look at how...

Karl Broman did a spiffy job summarizing a good number of the options available to R folk if they want to get notifications from R. You can also generate OS X notifications as well. If you’re using Slack for team coordination and communications, you’ve got a new option - slackr that also enables you...

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