Learners use hyperparameters to achieve better performance on particular
datasets. When we use a machine learning package to choose the best hyperparmeters,
the relationship between changing the hyperparameter and performance might not
be obvious. mlr provides several new
implementations to better understand what happens when we tune hyperparameters
and to help us optimize our choice of hyperparameters.
Let’s say you have a dataset, and you’re getting ready to flex your machine
learning muscles. Maybe you want to do classification, or regression, or
clustering. You get your dataset together and pick a few learners to evaluate.
The majority of learners that you might use for any of these tasks
have hyperparameters that the user must tune. Hyperparameters may be able to take
on a lot of possible values, so it’s typically left to the user to specify the
values. If you’re using a popular machine learning library like sci-kit learn,
the library will take care of this for you via cross-validation: auto-generating
the optimal values for your hyperparameters. We’ll then take these best-performing
hyperparameters and use those values for our learner. Essentially, we treat the
optimization of hyperparameters as a black box.
In mlr, we want to open up that black box, so
that you can make better decisions. Using the functionality built-in, we can
answer questions like:
- How does varying the value of a hyperparameter change the performance of the machine learning algorithm?
- On a related note: where’s an ideal range to search for optimal hyperparameters?
- How did the optimization algorithm (prematurely) converge?
- What’s the relative importance of each hyperparameter?
Some of the users who might see benefit from “opening” the black box of hyperparameter
- researchers that want to better understand learners in practice
- engineers that want to maximize performance or minimize run time
- teachers that want to demonstrate what happens when tuning hyperparameters
We’ll use Pima Indians dataset in this blog post, where we want to
predict whether or not someone has diabetes, so we’ll perform classification,
but the methods we discuss also work for regression and clustering.
Perhaps we decide we want to try kernlab’s svm for our
classification task. Knowing that svm has several hyperparameters to tune, we
can ask mlr to list the hyperparameters to refresh our memory:
Noting that we have default values for each of the hyperparameters, we could
simply accept the defaults for each of the hyperparameters and evaluate our
mmce performance using 3-fold cross validation:
While this result may seem decent, we have a nagging doubt: what if we chose
hyperparameter values different from the defaults? Would we get better results?
Maybe we believe that the default of
kernel = "rbfdot" will work well based
on our prior knowledge of the dataset, but we want to try altering our
regularization to get better performance. For kernlab’s svm, regularization
is represented using the
C hyperparameter. Calling
getParamSet again to
refresh our memory, we see that
C defaults to 1.
Let’s tell mlr to randomly pick
mmce using 3-fold cross validation:
mlr gives us the best performing value for
and we can see that we’ve improved our results vs. just accepting the default
C. This functionality is available in other machine learning packages, like
sci-kit learn’s random search, but this functionality is essentially treating our
C as a black box method: we give a search strategy and just accept
the optimal value. What if we wanted to get a sense of the relationship between
mmce? Maybe the relationship is linear in a certain range and we can
exploit this to get better even performance! mlr
provides 2 methods to help answer this question:
generate the resulting data and
plotHyperParsEffect providing many options
built-in for the user to plot the data.
Let’s investigate the results from before where we tuned
From the scatterplot, it appears our optimal performance is somewhere in the
2^-1.75. This could provide us a region to further
explore if we wanted to try to get even better performance!
We could also evaluate how “long” it takes us to find that optimal value:
By default, the plot only shows the global optimum, so we can see that we found
the “best” performance in less than 25 iterations!
But wait, I hear you saying. I also want to tune
sigma, the inverse kernel
width of the radial basis kernel function. So now we have 2 hyperparameters that
we want to simultaneously tune:
We can use
plotHyperParsEffect to easily create a heatmap with both hyperparameters.
We get tons of functionality for free here. For example, mlr
will automatically interpolate the grid to get an estimate for values we didn’t
even test! All we need to do is pass a regression learner to the
If we use the
show.experiments argument, we can see which points were
actually tested and which were interpolated:
plotHyperParsEffect returns a
ggplot2 object, so we can always customize it
to better fit our needs downstream:
Now we can get a good sense of where the separation happens for each of the
hyperparameters: in this particular example, we want lower values for
and values around 1 for
This was just a taste of mlr’s hyperparameter tuning visualization capabilities. For the full tutorial, check out the mlr tutorial.
Some features coming soon:
- “Prettier” plot defaults
- Support for more than 2 hyperparameters
- Direct support for hyperparameter “importance”
Thanks to the generous sponsorship from GSoC, and many thanks to my mentors Bernd Bischl and Lars Kotthoff!