amazing Gibbs sampler

February 18, 2015
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(This article was first published on Xi'an's Og » R, and kindly contributed to R-bloggers)

BayesmWhen playing with Peter Rossi’s bayesm R package during a visit of Jean-Michel Marin to Paris, last week, we came up with the above Gibbs outcome. The setting is a Gaussian mixture model with three components in dimension 5 and the prior distributions are standard conjugate. In this case, with 500 observations and 5000 Gibbs iterations, the Markov chain (for one component of one mean of the mixture) has two highly distinct regimes: one that revolves around the true value of the parameter, 2.5, and one that explores a much broader area (which is associated with a much smaller value of the component weight). What we found amazing is the Gibbs ability to entertain both regimes, simultaneously.

Filed under: Books, pictures, R, Statistics, University life Tagged: bayesm, convergence assessment, Gibbs sampler, Jean-Michel Marin, Markov chain Monte Carlo, mixtures, R

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