The above map (and this one) was produced using R and ggplot2 and serve to demonstrate just how sophisticated R visualisations can be. We are used to seeing similar maps produced with conventional GIS platforms or software such as Processing but I hadn’t yet seen one from the R community (feel free to suggest...
![the Art of R Programming [guest post]](http://akamaicovers.oreilly.com/images/9781593273842/lrg.jpg)
(This post is the preliminary version of a book review by Alessandra Iacobucci, to appear in CHANCE. Enjoy !) As Rob J. Hyndman enthusiastically declares in his blog, “this is a gem of a book”. I would go even further and argue that The Art of R programming is...
Lately I've been using the limma package often for analyzing microarray data. When I read in Affy CEL files using ReadAffy(), the resulting ExpressionSet won't contain any featureData annotation. Consequentially, when I run topTable to get a list of di...
In a previous post we looked at error handling in R with the tryCatch() function and how this could be used to write Java style try-catch-finally blocks. This time we’ll look at what can be done with the try() function … read mo...
The R language definition section on Exception Handling describes a very few basics about exceptions in R but is of little use to anyone trying to write robust code that can recover gracefully in the face of errors. In fact, … read mo...
Open-source R is an amazing tool for statistical analysis and data visualization. Serious R gurus have found ways to do just about anything entirely within the R environment. Nevertheless, there are many of us who wish to plug R into … ...
This is a copy of a post by me on the R-statistics blog. Fortran and C programmers often say that interpreted languages like R are nice and all, but lack in terms of speed. How fast something works in R… See more ›
In lab known for its quality data collection, high-speed video style, writing the weekly blog post can be a bit of a challenge for the local code monkey. That’s right, no videos today. But lucky for me, even this group … Continue reading →
These days one can frequently read about wordclouds created with R, initiated by the release of the wordcloud package by Ian Fellows on July 23rd. So here I am to put in my two cents. I thought about creating a wordcloud of a complete blog history, so I build a script that connects to...
While high-speed fish feeding videos may be the signature of the lab, dig a bit deeper and you’ll find a wealth of comparative phylogenetic methods sneaking in. It’s a natural union — expert functional morphology is the key to good … Continue reading →
Zero Inflated Models and Generalized Linear Mixed Models with R.
Zuur, Saveliev, Ieno (2012).