“Statistics with R” is a great R graphics & stats website. It provides lots of R examples, covering many analytics topics. It is also available as a PDF document to download at the website, as well as the R codes. The table of contents of the document are as below.

1. Introduction to R

2. Programming in R

3. From Data to Graphics

4. Customizing graphics

5. Factorial methods: Around Principal Component Analysis (PCA)

6. Clustering

7. Probability Distributions

8. Estimators and Statistical Tests

9. Regression

10. Other regressions

11. Regression Problems — and their Solutions

12. Generalized Linear Models: logistic regression, Poisson regression, etc.

13. Analysis of Variance (Anova)

14. Mixed Models

15. Time series

16. Miscellaneous

17. Applications

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