432 search results for "knitr"

When R, or any other language, is not enough

December 14, 2012
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When R, or any other language, is not enough

This post is tangential to R, although R has a fair share of the issues I mention here, which include research reproducibility, open source, paying for software, multiple languages, salt and pepper. There is an increasing interest in the reproducibility … Continue reading →

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Is invasive?

December 13, 2012
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Is invasive?

The Global Invasive Species Database (GISD) (see their website for more info here) has data on the invasiveness status of many species. From taxize you can now query the GISD database. Introducing the function gisd_isinvasive. This function was contributed to taxize by Ignasi Bartomeus, a postdoc at the Swedish University Agricultural Sciences. There are two possible outputs from using...

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Is invasive?

December 13, 2012
By
Is invasive?

The Global Invasive Species Database (GISD) (see their website for more info here) has data on the invasiveness status of many species. From taxize you can now query the GISD database. Introducing the function gisd_isinvasive. This function was contributed to taxize by Ignasi Bartomeus, a postdoc at the Swedish University Agricultural Sciences. There are two possible outputs from using...

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Using (R) Markdown, Jekyll, & GitHub for a Website

December 10, 2012
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Introduction Markdown has been growing in popularity for writing documents on the web. With the introduction of R Markdown (see also Jeromy Anglim’s post on getting started with R Markdown) and knitr, R Markdown has simplified the publishing of R analysis on the web. I recently converted my website from Wordpress to Jekyll. Jekyll...

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ICERM Reproducibility Workshop: Day 1

December 10, 2012
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I'm attending a workshop on reproducibility at ICERM (Brown University) this week. I really appreciate this great opportunity offered by ICERM, Randy and Victoria. It is pretty exciting to meet people that you only knew before through indirect ways. O...

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Shiny apps are awesome

December 10, 2012
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Shiny apps are awesome

RStudio has a new product called Shiny that, quoting from their website, "makes it super simple for R users like you to turn analyses into interactive web applications that anyone can use". See here for more information. A Shiny basically consists of two files: a ui.r file and a server.r file. The ui.r file, as it says, provides...

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Shiny apps are awesome

December 10, 2012
By
Shiny apps are awesome

RStudio has a new product called Shiny that, quoting from their website, "makes it super simple for R users like you to turn analyses into interactive web applications that anyone can use". See here for more information. A Shiny basically consists of two files: a ui.r file and a server.r file. The ui.r file, as it says, provides...

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One R package for all your taxonomic needs

December 6, 2012
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UPDATE: there were some errors in the tests for taxize, so the binaries aren't avaiable yet. You can install from source though, see below. Getting taxonomic information for the set of species you are studying can be a pain in the ass. You have to manually type, or paste in, your species one-by-one. Or, if you are lucky, there is...

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One R package for all your taxonomic needs

December 6, 2012
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UPDATE: there were some errors in the tests for taxize, so the binaries aren't avaiable yet. You can install from source though, see below. Getting taxonomic information for the set of species you are studying can be a pain in the ass. You have to manually type, or paste in, your species one-by-one. Or, if you are lucky, there is...

Read more »

Shiny released to CRAN; Shiny Server coming soon

December 5, 2012
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The shiny package, the R package from RStudio that makes it easy to build simple interactive interfaces for R scripts, is now available on CRAN. This will make it easier for R programmers to install and use shiny, and to run the interfaces they create from a local web browser. The next step is to be able to publish...

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