862 search results for "how to import image file to r"

XLConnect – A platform-independent interface to Excel

August 31, 2011
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XLConnect – A platform-independent interface to Excel

XLConnect is a comprehensive and platform-independent R package for manipulating Microsoft Excel files from within R. XLConnect differs from other related R packages in that it is completely cross-platform and as such runs under Windows, Unix/Linux and Mac (32- and 64-bit). Moreover, it … Continue reading →

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Popular topics at the BioStar Q&A site

August 23, 2011
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Popular topics at the BioStar Q&A site

Which topics are the most popular at the BioStar bioinformatics Q&A site? One source of data is the tags used for questions. Tags are somewhat arbitrary of course, but fortunately BioStar has quite an active community, so “bad” tags are usually edited to improve them. Hint: if your question is “How to find SNPs”, then

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useR! Conference 2011 highlights

August 20, 2011
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useR! Conference 2011 highlights

I was at the useR! Conference at The University of Warwick in Coventry, UK, last week. My goal in going was to learn the latest things regarding (simple) dynamic graphics, (simple) web-based apps, parallel computing, and memory management (dealing with big data sets). I got just what I was hoping for and more. There are

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Do older SOers use fewer words?

August 18, 2011
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Do older SOers use fewer words?

On StackOverflow, to posters with more experience ask their questions in fewer words? No. There's no visible difference: Chars of non-code: Chars of code: The data comes from the super-handy StackOverflow API, which was retrieved using wget and then parsed using rjson and XML. First read in and parse the JSON: so.R 1...

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I, Rbot: Tweeting from R

August 18, 2011
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I, Rbot: Tweeting from R

Over the past few weeks I’ve been running batches of JAGS simulations from R. Although these models typically converged within an hour or so, more complex models can take days, or even weeks to converge. Because we, as humans, are … Continue reading →

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Installing RStudio Server on Scientific Linux 6: My bash notebook

August 18, 2011
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Installing RStudio Server on Scientific Linux 6: My bash notebook

Granted, not a brilliant sysadmin mind at work here, but this might help someone someday.Scientific Linux (SL) is built from Red Hat Enterprise LinuxSee installation instructions here:http://rstudio.org/download/server$ sudo rpm -Uvhhttp://download.fedoraproject.org/pub/epel/6/x86_64/epel-release-6-5.noarch.rpm password for leipzig: Retrievinghttp://download.fedoraproject.org/pub/epel/6/x86_64/epel-release-6-5.noarch.rpmwarning: /var/tmp/rpm-tmp.S2RQAH: Header V3 RSA/SHA256 Signature, key ID0608b895: NOKEYPreparing... ...

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The stupidest R code ever

August 17, 2011
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The stupidest R code ever

Let’s start this blog off right, with the stupidest R mistake I’ve ever made (I think). In the R package that I write, R/qtl, one of the main file formats is a comma-delimited file, where the blank cells in the second row are important, as they distinguish the initial phenotype columns from the genetic marker

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In case you missed it: July Roundup

August 10, 2011
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In case you missed them, here are some articles from July of particular interest to R users. A simulation in R finds the value (or disadvantage) or drawing an X, J, Q or Z in Scrabble. How to display high-quality graphics on the web using SVG output from R. A review of Paul Murrell's talk about raster image support...

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Analysis of ISMB coverage at FriendFeed: 2008 – 2011

July 27, 2011
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Analysis of ISMB coverage at FriendFeed: 2008 – 2011

ISMB/ECCB 2011 was held between July 15-19 this year and as in previous years, FriendFeed was used to cover the meeting. Last year, I wrote a post about how to use R to analyse the coverage. I was planning something similar for 2011 when I thought: we have 4 years of ISMB at FriendFeed now

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Showcasing the latest phylogenetic methods: AUTEUR

July 20, 2011
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Showcasing the latest phylogenetic methods: AUTEUR

While high-speed fish feeding videos may be the signature of the lab, dig a bit deeper and you’ll find a wealth of comparative phylogenetic methods sneaking in.  It’s a natural union — expert functional morphology is the key to good comparative methods, just as phylogenies hold the key to untangling the evolutionary origins of that

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