566 search results for "SQL"

R Project and Google Summer of Code: Wrapping up

September 23, 2010
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R Project and Google Summer of Code: Wrapping up

As this year's admin, I wrote up the following summary which has now been posted at the R site in the appropriate slot. My thanks to this year's students, fellow mentors and everybody else who helped to make it happen. Projects 2010 As in 2008 a...

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R Project and Google Summer of Code: Wrapping up

September 23, 2010
By
R Project and Google Summer of Code: Wrapping up

As this year's admin, I wrote up the following summary which has now been posted at the R site in the appropriate slot. My thanks to this year's students, fellow mentors and everybody else who helped to make it happen. ...

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Why Use ProjectTemplate or Any Other Framework?

September 19, 2010
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We use frameworks like Ruby on Rails or ProjectTemplate to minimize the time we spend on irrelevant details. By definition, an irrelevant detail isn’t of interest to us. But how can we tell which details are irrelevant? This isn’t a trivial task and it seems to be, on the surface, a profoundly subjective matter. Thankfully,

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BLAS, BLASter, BLAStest: Some benchmark results, and a benchmarking framework

September 15, 2010
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BLAS, BLASter, BLAStest: Some benchmark results, and a benchmarking framework

Usage of accelerated BLAS libraries seems to shrouded in some mystery, judging from somewhat regularly recurring requests for help on lists such as r-sig-hpc (gmane version), the R list dedicated to High-Performance Computing. Yet it doesn't have to b...

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BLAS, BLASter, BLAStest: Some benchmark results, and a benchmarking framework

September 15, 2010
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BLAS, BLASter, BLAStest: Some benchmark results, and a benchmarking framework

Usage of accelerated BLAS libraries seems to shrouded in some mystery, judging from somewhat regularly recurring requests for help on lists such as r-sig-hpc (gmane version), the R list dedicated to High-Performance Computing. Yet it doesn't have to be...

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SyntaxHighlighter Brush for the R Language

September 11, 2010
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al Galili requested in the R-help mailing list for a SyntaxHighlighter brush for the R language, so that WordPress users can highlight their R code easily. I promised to contribute a few minutes on this task, and here is the result: /** * Author: Yihui Xie * URL: http://yihui.name/en/2010/09/syntaxhighlighter-brush-for-the-r-language * License: GPL-2 | GPL-3 */

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plyr and reshape: better, faster, more productive

September 10, 2010
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Hadley Wickham has just released updates to his data-manipulation packages for R, plyr and reshape (now called reshape2), that are much faster and more memory-efficient than the previous incarnations. The reshape2 package lets you flexibly restructure and aggregate data using just three functions (melt, acast and dcast), whereas the plyr package is kind of like a supercharged SQL "GROUP...

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Bot Botany – K-Means and ggplot2

September 2, 2010
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Bot Botany – K-Means and ggplot2

So if you had a robot that was an expert at botany - would you have a bot botanist?  Among other things, it would need to to distinguish flowers through vision and image processing, and be able to classify various kinds of plants based upon specif...

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Bot Botany – K-Means and ggplot2

September 2, 2010
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Bot Botany – K-Means and ggplot2

So if you had a robot that was an expert at botany - would you have a bot botanist?  Among other things, it would need to to distinguish flowers through vision and image processing, and be able to classify various kinds of plants based upon specif...

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GEO database: curation lagging behind submission?

August 30, 2010
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GEO database: curation lagging behind submission?

I was reading an old post that describes GEOmetadb, a downloadable database containing metadata from the GEO database. We had a brief discussion in the comments about the growth in GSE records (user-submitted) versus GDS records (curated datasets) over time. Below, some quick and dirty R code to examine the issue, using the Bioconductor GEOmetadb

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