396 search results for "KnitR"

Can We Live Without Backslashes?

October 30, 2012
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Can We Live Without Backslashes?

Two months ago there was a discussion in the ESS mailing list about Emacs/ESS started by Paul Johnson, who claimed "Emacs Has No Learning Curve". While this sounds impossible, he really has some good points, e.g. he encourages beginners to look at the ...

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Build Static HTML Help Pages for R Packages

October 29, 2012
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Build Static HTML Help Pages for R Packages

Many R users may still remember the good old days when we had static HTML documentation for R packages. That was probably before R 2.10.0 (in 2009). Then we had the fancy dynamic HTML help based on the built-in httpd server, but it has never really mad...

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Visiting FHCRC, JHSPH and Meeting Xi’an

October 29, 2012
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Visiting FHCRC, JHSPH and Meeting Xi’an

I have been traveling during the last two weeks. I visited Fred Hutchinson Cancer Research Center on Oct 16 and the Department of Biostatistics at Johns Hopkins at the invitation of Simply Statistics on Oct 23. Today Christian Robert was visiting our department at Iowa State, and I also talked to him. It is really cool...

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Chris Hamm on using plot.new() for better combined plots

October 26, 2012
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Chris Hamm on using plot.new() for better combined plots

At DRUG today, Chris Hamm (email (cahamm at ucdavis dot edu)) showed us an easier way to combine multiple figures into one plot using plot.new, rather than par(mfrow=...) Here’s his script: A Report Generated by knitr# plot.new() [email protected]#I discovered this plotting method when trying to add an inset figure # to a plot# plot.new is part of the traditional graphics....

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9 reasons to use RStudio

October 16, 2012
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9 reasons to use RStudio

In no particular order, here are nine reasons why I really like the RStudio IDE for the R statistical programming language. 1) R benefits from an IDE – I accept that in some languages an IDE is unnecessary—Perl is the first example … Continue reading →

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Getting taxonomic names downstream

October 16, 2012
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It can be a pain in the ass to get taxonomic names. For example, I sometimes need to get all the Class names for a set of species. This is a relatively easy problem using the ITIS API (example below).The much harder problem is getting all the taxono...

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Color Palettes in HCL Space

October 12, 2012
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Color Palettes in HCL Space

This is a quick follow-up to my previous post about Color Palettes in RGB Space. Achim Zeileis had commented that, perhaps, it would be more informative to evaluate the color palettes in HCL (polar LUV) space, as that spectrum more accurately describes how humans perceive color. Perhaps more clear trends would emerge in HCL space,

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Review: Kölner R Meeting 5 October 2012

October 10, 2012
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Review: Kölner R Meeting 5 October 2012

The third Cologne R user meeting took place last Friday, 5 October 2012, at the Institute of Sociology.The evening was sponsored by Revolution Analytics, who provided funding which went towards the Kölner R user group Meetup page. We had a good tur...

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Exploring phylogenetic tree balance metrics

October 10, 2012
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Exploring phylogenetic tree balance metrics

I need to simulate balanced and unbalanced phylogenetic trees for some research I am doing. In order to do this, I do rejection sampling: simulate a tree -> measure tree shape -> reject if not balanced or unbalanced enough. But what is enough? We ne...

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In case you missed it: September 2012 Roundup

October 8, 2012
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In case you missed them, here are some articles from September of particular interest to R users. You can now browse the R-devel sources and changelogs at GitHub. R is used to create a 3-D animation of the Antarctic ice cap. At the DataWeek SF conference, R users from eBay, Intuit, Minted and other companies describe how R is...

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