430 search results for "KnitR"

100 most read R posts in 2012 (stats from R-bloggers) – big data, visualization, data manipulation, and other languages

January 2, 2013
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100 most read R posts in 2012 (stats from R-bloggers) – big data, visualization, data manipulation, and other languages

R-bloggers.com is now three years young. The site is an (unofficial) online journal of the R statistical programming environment, written by bloggers who agreed to contribute their R articles to the site. Last year, I posted on the top 24...

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Just another R blog

January 2, 2013
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New year, new resolutions. This year, as a personal challenge, I decided to create a blog where I could share (and also receive) some tricks and tips about R programming language. The main motivation behind this blog is to learn how to use Knitr (http://yihui.name/knitr/). While I'm very concerned about the importance of...

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Integration of R, RStudio and Hadoop in a VirtualBox Cloudera Demo VM on Mac OS X

December 29, 2012
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Integration of R, RStudio and Hadoop in a VirtualBox Cloudera Demo VM on Mac OS X

MotivationI was inspired by Revolution's blog and step-by-step tutorial from Jeffrey Breen on the set up of a local virtual instance of Hadoop with R. However, this tutorial describes the implementation using VMware's application. One downside to using VMware is that it's not free. I know most of the people including me like to hear the words open-source and free,...

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Find Duplicate Files Using R

December 28, 2012
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Find Duplicate Files Using R

Find Duplicate Files This is a simple script to search a directory tree for all files with duplicate content. It …Continue reading »

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R Markdown to other document formats

December 26, 2012
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Perhaps you have a file written in Markdown with embedded R of the kind that RStudio makes so nice and easy but you’d like a range of output formats to keep your collaborators happy.  Say latex, pdf, html and MS Word.  Here’s what you might do I shall imagine your file is called doc.Rmd Install pandoc

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A simple web application using Rook

December 21, 2012
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A simple web application using Rook

by Ben Ogorek I'm grateful to Rook for helping me, a simple statistician, learn a few fundamentals of web technology. For R web application development, there are increasingly polished methods available (most notably Shiny ), but you can build one...

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NHS Winter Situation Reports: Shiny Viewer v2

December 18, 2012
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NHS Winter Situation Reports: Shiny Viewer v2

Having got my NHS Winter sitrep data scraper into shape (I think!), and dabbled with a quick Shiny demo using the R/Shiny library, I thought I’d tidy it up a little over the weekend and long the way learn a few new presentation tricks. To quickly recap the data availability, the NHS publish a weekly

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RStudio and TeXworks working great together

December 18, 2012
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RStudio and TeXworks working great together

Just now writing a reproducible report in R using RStudio on Ubuntu. So the source is a .Rnw file and I am compiling it with knitr. For the narrative part of the report it is a shame that RStudio doesn’t have autocomplete for latex styles, headings etc. But I just realised that it is possible

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When R, or any other language, is not enough

December 14, 2012
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When R, or any other language, is not enough

This post is tangential to R, although R has a fair share of the issues I mention here, which include research reproducibility, open source, paying for software, multiple languages, salt and pepper. There is an increasing interest in the reproducibility … Continue reading →

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Is invasive?

December 13, 2012
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Is invasive?

The Global Invasive Species Database (GISD) (see their website for more info here) has data on the invasiveness status of many species. From taxize you can now query the GISD database. Introducing the function gisd_isinvasive. This function was contributed to taxize by Ignasi Bartomeus, a postdoc at the Swedish University Agricultural Sciences. There are two possible outputs from using...

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