# 1145 search results for "LaTeX"

## How to make a scientific result disappear

February 27, 2013
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$How to make a scientific result disappear$

Nathan Danneman (a co-author and one of my graduate students from Emory) recently sent me a New Yorker article from 2010 about the “decline effect,” the tendency for initially promising scientific results to get smaller upon replication. Wikipedia can summarize the phenomenon as well as I can: In his article, Lehrer gives several examples where

## Ten Things the Emacs Social Science Starter Kit gives you

February 24, 2013
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I recently made some updates to the Emacs Social Science Starter Kit. I maintain the SSSK for my own convenience, but other people have found it useful as well. By now there are a lot of little bits and pieces in the kit, so I thought it might be usefu...

## Ten Things the Emacs Social Science Starter Kit gives you

February 24, 2013
By

I recently made some updates to the Emacs Social Science Starter Kit. I maintain the SSSK for my own convenience, but other people have found it useful as well. By now there are a lot of little bits and pieces in the kit, so I thought it might be usefu...

## Workflow w/ reports package

February 24, 2013
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NOTE: THIS IS NOW A PACKAGE SEE THIS LINK FOR DETAILS Let me start with a video for people who just want to see what I’m demo-ing first: I’ve been interested in speeding up workflow lately and spending a lot … Continue reading →

## bigcor: Large correlation matrices in R

February 22, 2013
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$bigcor: Large correlation matrices in R$

As I am working with large gene expression matrices (microarray data) in my job, it is sometimes important to look at the correlation in gene expression of different genes. It has been shown that by calculating the Pearson correlation between genes, one can identify (by high values, i.e. > 0.9) genes that share a common

## Simulated Power/Precision Analysis

February 21, 2013
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I cringe when I see research proposals that describe a sophisticated statistical approach, yet do not evaluate this approach in their power/precision/sample size planning. It's often the case that a simplified version of the proposed statistical approach is used instead. Presumably, this is due to the limited availability of power/precision/sample size planning software for sophisticated

## Removing white space around R figures

February 21, 2013
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When I want to insert figures generated in R into a LaTeX document, it looks better if I first remove the white space around the figure. Unfortunately, R does not make this easy as the graphs are generated to look good on a screen, not in a document. There are two things that can be done to fix this...

## Onepager Now with knitR

February 19, 2013
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Since at some point I had trouble with a conflict between knitr and the latex package textpos, I used the lesser Sweave in Another Experiment with R and Sweave.  I ran the Sweave2knitr command and discovered that textpos and knitr play well togeth...

## Predictors, responses and residuals: What really needs to be normally distributed?

February 18, 2013
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Introduction Many scientists are concerned about normality or non-normality of variables in statistical analyses. The following and similar sentiments are often expressed, published or taught: "If you want to do statistics, then everything needs to be normally distributed." "We normalized…Read more →