268 search results for "PCA"

A Conversation with Max Kuhn – The useR! 2014 Interview

August 11, 2014
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The Interview In the video above, Max provides some amazing insights into the why and...

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Parameterized SQL queries

August 5, 2014
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Mateusz Żółtak asked me to spread the word about his new R package for parameterized SQL queries. Below you can find the copy of package vignette. If you work with SQL in R you may find it useful. Mateusz Żółtak The package RODBCext is an extension of the RODBC database connectivity package. It provides support

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Things to try after useR! – Part 1: Deep Learning with H2O

July 25, 2014
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Things to try after useR! – Part 1: Deep Learning with H2O

Annual R User Conference 2014The useR! 2014 conference was a mind-blowing experience. Hundreds of R enthusiasts and the beautiful UCLA campus, I am really glad that I had the chance to attend! The only problem is that, after a few days of non-stop R talks, I was (and still am) completely overwhelmed...

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Advanced R Profiling with pbdPAPI

July 22, 2014
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Advanced R Profiling with pbdPAPI

R has some extremely useful utilities for profiling, such as system.time(), Rprof(), the often overlooked tracemem(), and the rbenchmark package. But if you want more than just simple timings of code execution, you will mostly have to look elsewhere. One of the best sources for profiling data is hardware performance counters, available in most modern hardware. This data can...

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Introduction to R for Life Scientists: Course Materials

July 7, 2014
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Introduction to R for Life Scientists: Course Materials

Last week I taught a three-hour introduction to R workshop for life scientists at UVA's Health Sciences Library.I broke the workshop into three sections:In the first half hour or so I presented slides giving an overview of R and why R is so awesome. Du...

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Stone Flakes V, networks again

July 6, 2014
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Stone Flakes V, networks again

Last week I tried pcalg. This week deal (Learning Bayesian Networks with Mixed Variables). The aim n this post I want to try something new, a causal graphical model. The aim here is just as much to get myself a feel what these things do as to underst...

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Using Biplots to Map Cluster Solutions

July 2, 2014
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Using Biplots to Map Cluster Solutions

FactoMineR is a quick and easy R package for generating biplots, such as the following plot showing the columns as arrows with the rows to be added later as points. As you might recall from a previous post, a biplot maps a data matrix by plotting both ...

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stone flakes IV

June 29, 2014
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stone flakes IV

In this post I want to try something new, a causal graphical model. The aim here is just as much to get myself a feel what these things do as to understand how the stone flakes data fit together. DataData are stone flakes data which I analyzed previous...

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Multivariate Data Analysis and Visualization Through Network Mapping

June 27, 2014
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Multivariate Data Analysis and  Visualization Through Network Mapping

Recently I had the pleasure of speaking about one of my favorite topics, Network Mapping. This is a continuation of a general theme I’ve previously discussed and involves the merger of statistical and multivariate data analysis results with a network. Over the past year I’ve been working on two major tools, DeviumWeb and MetaMapR, which

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Tailoring univariate probability distributions

June 26, 2014
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Tailoring univariate probability distributions

This post shows how to build a custom univariate distribution in R from scratch, so that you end up with the essential functions: a probability density function, cumulative distribution function, quantile function and random number generator. In the beginning all you need is an equation of the probability density function, … Continue reading →

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