3887 search results for "git"

Obviousness of REITs?

September 20, 2012
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Obviousness of REITs?

I very much enjoy papers such as Antonacci, Gary, Risk Premia Harvesting Through Momentum (September 5, 2012). Available at SSRN: http://ssrn.com/abstract=2042750 or http://dx.doi.org/10.2139/ssrn.2042750 Faber, Mebane T., A Quantitative Approach to T...

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How to use your favorite fonts in R charts

September 20, 2012
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How to use your favorite fonts in R charts

Today's guest post comes from Winston Chang, a software developer at RStudio — ed. When it comes to making figures in R, you can use any font you like, as long as it's Helvetica, Times, or Courier. Using other fonts that are installed on your computer can seem an impossible task, especially if you want to save the output...

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Converting an R object to text, with dput()

September 20, 2012
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We’ve already briefly covered making a reproducible example, but I thought I’d go a little more in-depth on the very helpful function dput(). Whenever I am having trouble applying an operation to some R object, and need help, but want to av...

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(Unsurprisingly) users default to the defaults

September 19, 2012
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(Unsurprisingly) users default to the defaults

Oddities tend to jump out when one uses software in a daily basis. The situation is even clearer when using software for teaching: many more people looking at it with fresh eyes. Let’s say that we are fitting a simple … Continue reading →

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Vertnet – getting vertebrate museum record data and a quick map

September 19, 2012
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Vertnet – getting vertebrate museum record data and a quick map

We (rOpenSci) started a repo to wrap the API for VertNet, an open access online database of vertebrate specimen records across many collection holders. Find the open source code here - please contribute if you are so inclined. We had a great Google Su...

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Automatic drug utilization reports with R and ggplot2

September 18, 2012
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Automatic drug utilization reports with R and ggplot2

This program takes a data set of drug utilisation of 4 fictional drugs in 10 fictional hospitals and plots each time-series with a locally weighted regression (Lowess) trend line. It also places an time-series trend of the usage for each … Continue reading →

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DESeq vs edgeR Comparison

September 18, 2012
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DESeq vs edgeR Comparison

Update (Dec 18, 2012): Please see this related post I wrote about differential isoform expression analysis with Cuffdiff 2.DESeq and edgeR are two methods and R packages for analyzing quantitative readouts (in the form of counts) from high-throughput e...

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Creating Posters using R, Latex, Beamer and Beamerposter

September 18, 2012
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Creating Posters using R, Latex, Beamer and Beamerposter

A while ago I had the need to produce some posters that included lots of data (scientific style).  Having recently got back into R and learning LaTex I googled for a way to do this using R.  Here's what I found and ended up with, using R, LaT...

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Embedding \(\LaTeX\) in Tumblr

September 18, 2012
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The classic Pythagorean identity is:  \(sin^2(\theta) + cos^2(\theta) =1 \) The binomial formula which calculates the probability of obtaining k tails when flipping a coin n times, with a assumed probability p for each trial is: \( P(E)   = {n \choos...

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Getting data from figures in published papers

September 18, 2012
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Getting data from figures in published papers

The problem: There are a lot of figures in published papers in the scholarly literature, like the below, from (Attwood et. al. 2012)): At some point, a scientist wants to ask a question for which they can synthesize the knowledge on that question b...

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