6186 search results for "git"

GRAN and switchr can’t send you back in time, but they can send R (sort of)

August 5, 2014
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GRAN and switchr can’t send you back in time, but they can send R (sort of)

Using package repositories to recreate the past, distribute the present, and protect against the future by Gabriel Becker (@groundwalkergmb) Bioinformatics and Computational Biology Genentech Research and Early Developmen 1. Have you ever needed to reach into the distant past … to recreate a years old result? Take - as an arbitrary example - Anders and Huber's paper on Differential...

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ESA 2014: Don’t Know Much About History…

August 5, 2014
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ESA 2014: Don’t Know Much About History…

After my last post text-mining ESA Annual Meeting abstracts, Nash Turley was interested in the presence of the term “natural history” in ESA abstracts. I decided to collect a little more data by including programs back to 2010, giving a five-year data set. Thankfully the program back to 2010 remains in mostly the...

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Social Media Mining and Bioinformatics (with R)

August 5, 2014
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Social Media Mining and Bioinformatics (with R)

In June and July, I receive copies of two books, Social Media Mining with R, by Nathan Danneman and Richard Heimann Bioinformatics with R Cookbook, by Paurush Praveen Sinha For the first one, two recent interesting books deal with the same topic. Reza Zafarani, Mohammad Ali Abbasi and Huan Liu published last year Social Media Mining: An Introduction. Actually, the book can...

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BH release 1.54.0-3

August 4, 2014
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BH release 1.54.0-3

A new release of our BH package providing Boost headers for use by R is now on the CRAN mirrors. This release is the third based on Boost 1.54.0. At the request of the maintainer of the recent added RcppMLPACK package, it adds the Boost.Heap l...

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Parsing Domain Names in R with tldextract

August 4, 2014
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The R Language is really good at data and statistical analysis, but when it comes to working with information security data it has a few holes that need plugging up. Bob has been doing a couple of posts using Rcpp to do things like Basic DNS Lookups, TXT lookups, and IPv4 Conversions. I wanted to add to some of that work with a quick package...

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Introducing the Shiny App DThiring

August 4, 2014
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Well it has a been a long time since I have written anything on this blog.  I am long overdue.  I've been terribly busy learning new things and getting on with life.  One of the things I have learned is building R applications using Shin...

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Sorted HTML Tables and Javascript Libraries

August 4, 2014
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Sorted HTML Tables and Javascript Libraries

A few days ago StatsInTheWild asked the following question In the R function “sortable.html.table”, it's sorting 9.2 higher than 30.5 because of the leading digit. How do I fix this? — SITW (@StatsInTheWild) July 23, 2014 So we had a few exchanges where I thought you could use sprintf and be done but it didn't

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Basic Forward and Reverse DNS Lookups In R (with Rcpp)

August 4, 2014
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Back in April, we showed you how to use a C resolver library to make many different kinds of DNS lookups. More oft than not, such complete functionality is not necessary, but R still only provides nsl to get an IPv4 address of a given hostname, which is woefully inadequate. I needed to write an R implementation...

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Package rankings, task view rankings and much more: the Rdocumentation poster

August 4, 2014
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Package rankings, task view rankings and much more: the Rdocumentation poster

Especially for useR! 2014 we created a poster on Rdocumentation.org, our R documentation aggregator that lets you search packages from CRAN, Bioconductor and GitHub. We received a lot of positive and valuable feedback on it, so we decided to share it again via our blog. The Rdocumentation poster answers questions such as: What are the 10

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Guns are Cool – Differences between states

August 3, 2014
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Guns are Cool – Differences between states

Last week my blog showed that there are differences between states in the shootingtracker database. This week it is attempted to understand why states are different. A number of variables were extracted from a few sources, among which gun laws, % ...

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