5038 search results for "git"

AntWeb – programmatic interface to ant biodiversity data

February 18, 2014
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AntWeb – programmatic interface to ant biodiversity data

Data on more than 10,000 species of ants recorded worldwide are available through from California Academy of Sciences' AntWeb, a repository that boasts a wealth of natural history data, digital images, and specimen records on ant species from a large community of museum curators. Digging through some of the earliest announcements of AntWeb, I came across...

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Sochi 2014, R, D3.js

February 18, 2014
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Sochi 2014, R, D3.js

Ramnath design rCharts wich combine the powerful of open source R and D3.js.It give very pretty plots. Here is some code, using package XML to collect the data from http://www.sochi2014.com/fr/classement-des-medailles and plot a kind of sankey diagram ...

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Tutorials- Statistical and Multivariate Analysis for Metabolomics

February 17, 2014
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Tutorials- Statistical and Multivariate Analysis for Metabolomics

I recently had the pleasure in participating in the 2014 WCMC Statistics for Metabolomics Short Course. The course was hosted by the NIH West Coast Metabolomics Center and focused on statistical and multivariate strategies for metabolomic data analysis. A variety of topics were covered using 8 hands on tutorials which focused on: data quality overview

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A Delicious Analysis! (aka topic modelling using recipes)

February 17, 2014
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A Delicious Analysis! (aka topic modelling using recipes)

A few months ago, I saw a link on twitter to an awesome graph charting the similarities of different foods based on their flavour compounds, in addition to their prevalence in recipes (see the whole study, The Flavor Network and the … Continue reading →

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Changed and new things in the new version of rgbif, v0.5

February 17, 2014
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rgbif is an R package to search and retrieve data from the Global Biodiverity Information Facilty (GBIF). rgbif wraps R code around the to allow you to talk to GBIF from R. We just pushed a new verion of rgbif to cran - v0.5.0. Source and binary files are now available on CRAN. There are...

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demodulating time series

February 17, 2014
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demodulating time series

This posting shows how one might perform demodulation in R. It is assumed that readers are generally familiar tith the procedure. First, create some fake data, a carrier signal with period 10, modulated over a long timescale, and with phase drifting linearly over time. 1 2 3 4 5 6 7 8 9 10 period <- 10 fc <- 1/period fs <- 1 n...

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Probabilistic Momentum

February 16, 2014
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Probabilistic Momentum

David Varadi has recently discussed an interesting strategy in the Are Simple Momentum Strategies Too Dumb? Introducing Probabilistic Momentum post. David also provided the Probabilistic Momentum Spreadsheet if you are interested in doing computations in Excel. Today I want to show how you can test such strategy using the Systematic Investor Toolbox: The Simple Momentum

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Publishing dynamic data on ocpu.io

February 16, 2014
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Publishing dynamic data on ocpu.io

Suppose you would like to publish some data, for example to accompany a journal article. One way would be to put a CSV file on your website, and share the URL with your colleagues. However CSV has many limitations: it only works for tabular structures, has limited type safety (pretty much everything...

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Interactive charts with rCharts

February 15, 2014
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I have a few upcoming presentations as a part of job interviews. To prepare for these interviews, I'm attempting to make my figures a bit more interactive within my presentations. The aim is to be able to limit any large cumbersome tables I would need to include in my presentations and replace them with interactive plots that can...

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Encrypt user’s password with md5 for you Shiny-app

February 14, 2014
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In a previous blog, I post a simple authentication method for Shiny-app, and received several comments mainly concerning that I should encrypt user password. I agree, user’s password can be intercepted when it was transferring. To secure users’ personal information, I think we should consider both server and client sides. Your server could be hacked and...

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