4805 search results for "git"

Creating custom CDF for Affy chips in R / Bioconductor

Creating custom CDF for Affy chips in R / Bioconductor What? For those who don't know, CDF files are chip definition format files that define which probes belong to which probesets, and are necessary to use any of the standard summarization methods such as RMA, and others. Why? Because we can, and because custom definitions have been shown to be quite useful. See...

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Writing papers using R Markdown

Writing papers using R Markdown

Writing papers using R Markdown I have been watching the activity in RStudio and knitr for a while, and have even been using Rmd (R markdown) files in my own work as a way to easily provide commentary on an actual dataset analysis. Yihui has proposed writing papers in markdown and posting them to a blog as a way...

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Creating awesome reports for multiple audiences using knitrBootstrap

December 10, 2013
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Creating awesome reports for multiple audiences using knitrBootstrap

As a biostatistics student, I use R very frequently when analyzing data. At the same time, I interact with other researchers, some who know how to use R (R crowd) and some who don't (yet!): no-R crowd. This means that I have to be able to communicate my results to two crowds. It is important that I can quickly...

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eeptools 0.3 Released!

December 9, 2013
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Version 0.3 of my R package of miscellaneous code has been released, this time with substantial contributions from Jason Becker via GitHub. Progress continues toward the ultimate goal for eeptools to "make it easier for administrators at stat...

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Matrix factorizations and social network graph analysis

December 9, 2013
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Matrix factorizations and social network graph analysis

This is a lecture post for my students in the CUNY MS Data Analytics program. In this series of lectures …Continue reading »

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The Tornado Project

December 9, 2013
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GoalBring consistency and transparency to the analyses of publicly available Tornado datasets using an R-based open source analysis.IssuesTornado data available from the NOAA Storm Prediction Center and other government agencies around the world h...

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Graphing my MPG vs Temperature

December 9, 2013
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Graphing my MPG vs Temperature

I use Fuelly to track the fuel mileage in my Toyota Tundra pickup truck. They have a mobile app, so while I'm waiting for the truck to fill up, I log the odometer, and the number of gallons that I put in and then also the price per gallon of fuel ...

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Adobe Analytics Implementation Documentation in 60 seconds

December 9, 2013
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When I was working as a digital analytics consultant, no question quite had the ability to cause belly laughs AND angst as, “Can you send me an updated copy of your implementation documentation?” I saw companies that were spending six-or-seven-figures annually on their analytics infrastructure, multi-millions in salary for employees and yet the only way Adobe Analytics Implementation...

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roxygen2 3.0.0

December 9, 2013
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roxygen2 3.0.0

We’re pleased to announce a new version of roxygen2. The biggest news is that you can painlessly document your S4 classes, S4 methods and RC classes with roxygen2 – you can safely remove workarounds that used @alias and @usage, and simply rely on roxygen2 to do the right thing. Roxygen2 is also much smarter when

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Storing package data in custom environments

Storing package data in custom environments If you do R package development, sometimes you want to be able to store variables specific to your package, without cluttering up the users workspace. One way to do this is by modifying the global options. This is done by packages grDevices and parallel. Sometimes this doesn't seem to work quite right (see this...

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