Blog Archives

k-mean clustering + heatmap

October 10, 2011
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If you want more info about clustering, I have another post about "Clustering analysis and its implementation in R". Here is the link:  http://onetipperday.blogspot.com/2012/04/clustering-analysis-2.html------------Several R functions in this...

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display time series data in R

August 19, 2011
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display time series data in R

Thanks to the Revolutions blog, several things learned here:1. R code for heat calendar2. generate SVG from R3. pretty-R toolOK. Let's explain it by plotting the fund WASCX (IVY ASSET STRATEGY FUND CLASS C) from 2009-03-14:# source code of calendarHeat...

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One R Tip A Day: How to draw a plot with two Y axises and one X axis

August 17, 2011
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One R Tip A Day: How to draw a plot with two Y axises and one X axis

One R Tip A Day: How to draw a plot with two Y axises and one X axisplot(1:10)par("usr")# 0.64 10.36 0.64 10.36# Now resetting y axis' usr coordinates:par(usr=c(par("usr"), 101, 105))points(1:5, 105:101, col="red")axis(4)par(mar=c(4, 5, 4, 5) ...

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An efficient way to do dataset intersection

July 27, 2011
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The main message is to use "match" to get index of needed rows and then get the rows by the index, instead of using the row names to select, which is much slower. Here is example:In example above, we know that the same values of column 2nd have same values of columns from 4th to the end. So, instead...

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Interesting packages of new BioC2.7

November 1, 2010
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NuPoP Nucleosome positioning predictionMulcom Differential expression and false discovery rate calculation through multiple comparisonontoCAT Ontology parsingBHC Bayesian Hierarchical ClusteringiSeq Bayesian Hierarchical Modeling of ChIP-seq...

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