Blog Archives

Curling – exploring web request options

December 18, 2014
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rOpenSci specializes in creating R libraries for accessing data resources on the web from R. Most times you request data from the web in R with our packages, you should have no problem. However, you evenutally will run into problems. In addition, there are advanced things you can do modifying requests to web resources that fall in the advanced...

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Growth of open data in biology

November 10, 2014
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Growth of open data in biology

Why open data growth At rOpenSci we try to make it easier for people to use open data and contribute open data to the community. The question often arises: How much open data do we have? Another angle on this topic is: How much is open data growing? We provide access to dozens of data respositories through our various packages. We...

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Introducing Rocker: Docker for R

October 23, 2014
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Introducing Rocker: Docker for R

You only know two things about Docker. First, it uses Linux containers. Second, the Internet won't shut up about it. -- attributed to Solomon Hykes, Docker CEO So what is Docker? Docker is a relatively new open source application and service, which is seeing interest across a number of areas. It uses recent Linux kernel features (containers, namespaces) to shield processes. While its...

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New fiscal sponsorship agreement with NumFocus foundation

October 1, 2014
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New fiscal sponsorship agreement with NumFocus foundation

I’m very pleased to announce that rOpenSci has signed a comprehensive fiscal sponsorship agreement with the NumFocus foundation, a 501(c)3 nonprofit that supports R&D for open source scientific software projects. We are delighted to be in the company of esteemed projects such as IPython and Julia that share our goal of promoting reproducible research practices...

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NCEAS Codefest Follow-up

September 23, 2014
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The week after labor day, we had the pleasure of attending the NCEAS open science codefest event in Santa Barbara. It was great to meet folks like the new arrivals at the expanding Mozilla Science Lab, Bill Mills and Abby Cabunoc (Bill even already has a great post up about the codefest), and see...

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rOpenSci at NESCent Open Tree of Life Hackathon

August 15, 2014
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The Open Tree of Life project aims to synthesize our combined knowledge of how organisms relate to each other, and make the results available to anyone who wants to use them. At present, the project contains data from more than 4,000 published phylogenies, which combine with other data sources to make a tree that covers 2.5...

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Announcing our ambassadors program

August 11, 2014
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In the last 12 months we traveled all over the world delivering talks and hands on workshops at various conferences and universities. This was a great opportunity for us to raise awareness for the project and get more of you involved as contributors and collaborators. As we scale the project to the next level, we need your help in...

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Community conversations and a new package for full text

August 8, 2014
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Community Community is at the heart of rOpenSci. We couldn't have accomplished most of our work without help from various contributors and users. Most of our discussions with the broader community over the past year have been through twitter or one-on-one conversations. However, we would like to foster more open ended and deeper discussions with our community. To this end,...

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NCEAS Codefest

August 6, 2014
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We're delighted to be sponsoring the upcoming Open Science Codefest in Santa Barbara, California, alongside RENCI, NCEAS, NSF, DataONE, and Mozilla Science Lab. The Open Science Codefest's goal is to gather researchers from across ecology, biodiversity science, and other earth and environmental sciences with programmer types to collaborate on coding projects. The ideas...

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Changes in rnoaa v0.2.0

July 21, 2014
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We just released v0.2 of rnoaa. For details on the update, see the release notes. What follows are some notes on the more important changes. Updating to v0.2 Install rnoaa from CRAN install.packages("rnoaa") or Github devtools::install_github("ropensci/rnoaa") Then load rnoaa library("rnoaa") UI changes We changed almost all function names to have a more intuitive programmatic user interface (or UI). We changed all noaa*() functions to ncdc*() - these work...

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