Blog Archives

Using the Debug Option in readDICOMfile()

September 20, 2014
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Using the Debug Option in readDICOMfile()

Some recent activity in stackoverflow was brought to my attention.  Specifically, several questions were raised with reading files into R using readDICOMFile() in the oro.dicom package. The questions did highlight some inadequacies in the code, an...

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dcemriS4 0.51

December 30, 2013
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dcemriS4 0.51

The R package dcemriS4 provides routines for the quantitative analysis of dynamic contrast-enhanced magnetic resonance imaging (DCE-MRI), along with quantification of diffusion-weighted MRI (DWI) and quantitative T2 maps from CPMG sequences.  The ...

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oro.dicom 0.4.0

December 29, 2013
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The R package oro.dicom contains data input/output functions for medical imaging data that conform to the Digital Imaging and Communications in Medicine (DICOM) standard, part of the Rigorous Analytics bundle.The latest version of oro.dicom (0.4.0) con...

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oro.nifti 0.4.0

December 29, 2013
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oro.nifti 0.4.0

Okay, so it's been quite a while since I provided an entry associated with oro.nifti.  That doesn't mean things haven't moved on... they have.  Let's just say I've been occupied.  One of the biggest changes to oro.nifti recently has been...

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dcemriS4 0.46

December 29, 2011
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dcemriS4 0.46

The R package dcemriS4 provides routines for the quantitative analysis of dynamic contrast-enhanced magnetic resonance imaging (DCE-MRI), along with quantification of diffusion-weighted MRI (ADC = apparent diffusion coefficient) and quantitative T2 map...

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Magnetic Resonance Imaging in R

December 29, 2011
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Volume 44 of the Journal of Statistical Software was published in October 2011.  The special volume on “Magnetic Resonance Imaging in R” features articles and packages related to a variety of imaging modalities:functional MRIdiffusion-weighted MRIdynamic contrast-enhanced MRIdynamic susceptibility-contrast MRI structural MRIThe papers describe the methodology, software implementation and provide comprehensive examples and data. ...

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oro.nifti 0.3.1

December 27, 2011
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oro.nifti 0.3.1

The  package oro.nifti contains functions for the input/output and visualization of medical imaging data that follow either the ANALYZE, NIfTI or AFNI formats.  This package is part of the Rigorous Analytics bundle.Lightbox display of fu...

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oro.dicom 0.3.3

December 27, 2011
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oro.dicom 0.3.3

The R package oro.dicom contains data input/output functions for medical imaging data that conform to the Digital Imaging and Communications in Medicine (DICOM) standard, part of the Rigorous Analytics bundle.The latest version of oro.dicom (0.3.3) con...

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Data-driven arterial input functions

December 22, 2010
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Data-driven arterial input functions

I haven't devoted any time/effort/code to the extraction and parameter estimation of arterial input functions (AIFs) for DCE-MRI in either the vignette or the submission to JSS.  Frankly, I wanted to communicate the main features of the R package dcemriS4 and data-driven AIFs just haven't made the list... up 'til now.  So let's assume one wants to fit...

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Data-driven arterial input functions

December 22, 2010
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Data-driven arterial input functions

I haven't devoted any time/effort/code to the extraction and parameter estimation of arterial input functions (AIFs) for DCE-MRI in either the vignette or the submission to JSS.  Frankly, I wanted to communicate the main features of the R package dcemriS4 and data-driven AIFs just haven't made the list... up 'til now.  So let's assume one wants to fit...

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