Blog Archives

Stan Model of the Week: PK Calculation of IV and Oral Dosing

March 10, 2014
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Stan Model of the Week:  PK Calculation of IV and Oral Dosing

We’re going to be starting a Stan “model of the P” (for some time period P) column, so I thought I’d kick things off with one of my own. I’ve been following the Wingvoet blog, the author of which is identified only by the Blogger handle Wingfeet; a couple of days ago this lovely post The post

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Stupid R Tricks: Random Scope

January 29, 2014
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Andrew and I have been discussing how we’re going to define functions in Stan for defining systems of differential equations; see our evolving ode design doc; comments welcome, of course. About Scope I mentioned to Andrew I would prefer pure lexical, static scoping, as found in languages like C++ and Java. If you’re not familiar The post

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Stan 1.3.0 and RStan 1.3.0 Ready for Action

April 12, 2013
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Stan 1.3.0 and RStan 1.3.0 Ready for Action

The Stan Development Team is happy to announce that Stan 1.3.0 and RStan 1.3.0 are available for download. Follow the links on: Stan home page: http://mc-stan.org/ Please let us know if you have problems updating. Here’s the full set of release notes. v1.3.0 (12 April 2013) ====================================================================== Enhancements ---------------------------------- Modeling Language * forward sampling (random The post Stan...

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Stan 1.2.0 and RStan 1.2.0

March 6, 2013
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Stan 1.2.0 and RStan 1.2.0

Stan 1.2.0 and RStan 1.2.0 are now available for download. See: http://mc-stan.org/ Here are the highlights. Full Mass Matrix Estimation during Warmup Yuanjun Gao, a first-year grad student here at Columbia (!), built a regularized mass-matrix estimator. This helps for posteriors with high correlation among parameters and varying scales. We’re still testing this ourselves, so The post Stan...

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Stan and RStan 1.1.0

December 17, 2012
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Stan and RStan 1.1.0

We’re happy to announce the availability of Stan and RStan versions 1.1.0, which are general tools for performing model-based Bayesian inference using the no-U-turn sampler, an adaptive form of Hamiltonian Monte Carlo. Information on downloading and installing and using them is available as always from Stan Home Page: http://mc-stan.org/ Let us know if you have The post Stan...

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A Stan is Born

August 30, 2012
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Stan 1.0.0 and RStan 1.0.0 It’s official. The Stan Development Team is happy to announce the first stable versions of Stan and RStan. What is (R)Stan? Stan is an open-source package for obtaining Bayesian inference using the No-U-Turn sampler, a variant of Hamiltonian Monte Carlo. It’s sort of like BUGS, but with a different language The post A...

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Martyn Plummer’s Secret JAGS Blog

December 7, 2011
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Martyn Plummer, the creator of the open-source, C++, graphical-model compiler JAGS (aka “Just Another Gibbs Sampler”), runs a forum on the JAGS site that has a very similar feel to the mail-bag posts on this blog. Martyn answers general statistical computing questions (e.g., why slice sampling rather than Metropolis-Hastings?) and general modeling (e.g., why won’t The post Martyn...

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Super Sam Fuld Needs Your Help (with Foul Ball stats)

July 13, 2011
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I was pleasantly surprised to have my recreational reading about baseball in the New Yorker interrupted by a digression on statistics. Sam Fuld of the Tampa Bay Rays, was the subjet of a Ben McGrath profile in the 4 July 2011 issue of the New Yorker, in an article titled Super Sam. After quoting a minor-league...

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