3962 search results for "git"

Search for CRAN, GitHub and BioConductor packages at Rdocumentation.org

August 15, 2014
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Search for CRAN, GitHub and BioConductor packages at Rdocumentation.org

If you're looking for just the right package to solve your R problem, you could always browse through the list of available packages on CRAN. But with almost 6000 entries, that's not going to be the most efficient process. And even then, many very useful packages aren't found on CRAN: there are more than 800 packages hosted on BioConductor...

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“F-bombs” in GitHub Commits (warning: contains profanity)

July 30, 2014
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“F-bombs” in GitHub Commits (warning: contains profanity)

Warning: this post contains profanity...arguably excessive amounts of it.  If you are a humorless no-fun, you are recommended to proceed no further. Seriously though, the title is quite descriptive of the content of this post.  If you are offended by the use of such language, or if your boss is likely to come peering over your shoulder soon, I...

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Including GitHub and Bioconductor on Rdocumentation: Technical Details

July 10, 2014
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Including GitHub and Bioconductor on Rdocumentation: Technical Details

In our last blog post we announced the addition of GitHub and  Bioconductor R packages to Rdocumentation. For the more technical amongst you, I’ll give a short, high-level description of what’s under the hood at Rdocumentation. Along with that I’ll zoom in on some of the challenges encountered while adding GitHub and Bioconductor repositories. Rdocumentation

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Simple script from setting up R, Git, and Jags on Amazon EC2 Ubuntu Instance

June 28, 2014
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Just wanted to put up the script I've been using to create an Amazon EC2 Ubuntu instance for running RStudio, Git, and Jags. There isn't anything really new in here, but it it has been serving me well. The script begins after the basic instance has bee...

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Cleaning up oversized github repositories for R and beyond

June 25, 2014
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Cleaning up oversized github repositories for R and beyond

The version control system Git is an amazing piece of software for tracking every change that you make to a project and saving its entire history. It is incredibly useful, for users of R and other programming languages, leading it shoot from 0 market share in 2005 (when it was first released) to market domination in one short decade. However, Git can cause confusion....

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New! Search GitHub and Bioconductor packages on Rdocumentation

June 23, 2014
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New! Search GitHub and Bioconductor packages on Rdocumentation

As of today, you can search via Rdocumentation not only CRAN packages, but also the R packages available on GitHub and Bioconductor.  This is our largest update yet, and brings us one step closer to creating  a central place for all R documentation related info and questions. Today, the rise of alternatives to CRAN package management

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AlienVault Longitudinal Study Part 4

AlienVault Longitudinal Study Part 4

In Part 1 we looked at acquiring raw data, and wrangling it into a time series dataset. In Part 2 we looked at types of threats in the time series. In Part 3 we looked at countries. Now we will examine countries and types in combination in the AlienVault reputation database. Just as we shaped our dataset for better understanding in previous...

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Using Repeated Measures to Remove Artifacts from Longitudinal Data

June 4, 2014
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Using Repeated Measures to Remove Artifacts from Longitudinal Data

Recently I was tasked with evaluating and most importantly removing analytical variance form a longitudinal metabolomic analysis carried out over a few years and including >2,5000 measurements for >5,000 patients. Even using state-of-the-art analytical instruments and techniques long term biological studies are plagued with unwanted trends which are unrelated to the original experimental design and stem from analytical

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Collaborative lesson development with GitHub

June 2, 2014
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If you're doing any kind of scientific computing and not using version control, you're doing it wrong. The git version control system and GitHub, a web-based service for hosting and collaborating on git-controlled projects, have both become wildly popu...

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Mindoro Digital Elevation Map Updated

May 30, 2014
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Mindoro Digital Elevation Map Updated

Almost 2 years ago, I made a post on creating digital elevation map using R. For that post, I used the basic R plotting function to create the map. Recently, I started learning to use ggplot2 package for visualizing data. Today, I created the same map ...

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