Monthly Archives: April 2013

R 3.0 released; ggplot2 stat_summary bug fixed!

April 4, 2013
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The new version of R was released yesterday. As I understand it, the numbering change to 3.0 represents the recognition that R had evolved enough to justify a new number rather than the addition of many new features. There are some important new featur...

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An Introduction to SAS for R Programmers

April 4, 2013
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by Joseph Rickert Life decisions are usually much too complicated to be attributed to any single cause, but one important reason that I am here at Revolution today is that I ignored suggestions from well-meaning faculty back in graduate school to work more in SAS rather than doing everything in R. There was a heavy emphasis on SAS then:...

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List of Bioinformatics Workshops and Training Resources

April 4, 2013
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I frequently get asked to recommend workshops or online learning resources for bioinformatics, genomics, statistics, and programming. I compiled a list of both online learning resources and in-person workshops (preferentially highlighting those where workshop materials are freely available online):List of Bioinformatics Workshops and Training ResourcesI hope to keep the page above as up-to-date as possible....

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Test from knitr to wordpress

April 4, 2013
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Test from knitr to wordpress

Title This is an R Markdown document. Markdown is a simple formatting syntax for authoring web pages (click the MD toolbar button for help on Markdown). When you click the Knit HTML button a web page will be generated that includes both content as well as the output of any embedded R code chunks within

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Measuring the Intensity of Historical Crises with VaR (Part 2)

April 4, 2013
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Measuring the Intensity of Historical Crises with VaR (Part 2)

Adam Duncan, December 2012Also avilable on R-bloggers.com If you missed the first part of this analysis, be sure to check it out on gtog.github.com.In this part of the analyis, I’m going to look at the actual 1 day negative returns / VaR estimates (“VaR breaks”) across a numnber of different asset classes. The hope is to arrive at...

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Construct an unique index from two integer (Pairing Function)

April 3, 2013
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Construct an unique index from two integer (Pairing Function)

Recently, I need to construct an unique index from two integer. The best solution I found is the Pairing function. Pairing function is an one to one and onto function that map two integers to a single integer. The definition as follows: If ordering of x and y is not important, we can swap x

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Interactive visualization of survival curves with Shiny

April 3, 2013
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Interactive visualization of survival curves with Shiny

We have a growing interest in using our favorite tools (R and Mathematica) to build web interfaces to interactively explore and visualize data. Our last 5 posts have involved interactive tools, namely Mathematica’s computable document format and R’s new Shiny package. There is a new kid on the block for interactive visualization tools in R,

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A brief note: R 3.0.0 and bioinformatics

April 3, 2013
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A brief note: R 3.0.0 and bioinformatics

Today marks the release of R 3.0.0. There will be plenty of commentary and useful information at sites such as R-bloggers (for example, Tal’s post). Version 3.0.0 is great news for bioinformaticians, due to the introduction of long vectors. What does that mean? Well, several months ago, I was using the simpleaffy package from Bioconductor

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R version 3 released

April 3, 2013
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The R language marks a major milestone today with the release of R 3.0.0 (codename: "Masked Marvel"). The increment in the version number reflects not a fundamental change in the R langauge itself, but a recognition that the R codebase has matured to a point where closing out the 2.x series makes sense. Nonetheless, this release does include some...

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Tables Are Like Cockroaches

April 3, 2013
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Tables Are Like Cockroaches

As much as I would like to completely replace all tables with beautiful, intuitive, and interactive charts, tables like cockroaches cannot be eliminated. Based on this very interesting discussion on the Perceptual Edge forum with source Exploring the Origins of Tables for Information Visualization, tables date back to 1850 BCE. The paper concludes with As part of...

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